PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
16451-16500 / 86044 show all
gduggal-bwafbINDELC6_15segdup*
0.0000
0.0000
97.0588
00010
0.0000
gduggal-snapfbINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
97.0588
30300
dgrover-gatkINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0588
10100
eyeh-varpipeINDELC6_15map_l100_m2_e1hetalt
0.0000
0.0000
100.0000
97.0588
00100
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.0588
10100
egarrison-hhgaINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
97.0588
10100
egarrison-hhgaINDELI6_15map_l250_m2_e1*
93.3333
87.5000
100.0000
97.0588
71700
egarrison-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
97.0588
11100
ndellapenna-hhgaINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
97.0588
10100
ndellapenna-hhgaINDELD1_5map_l150_m2_e1hetalt
93.3333
87.5000
100.0000
97.0588
71700
ndellapenna-hhgaINDELI16_PLUSsegduphetalt
100.0000
100.0000
100.0000
97.0588
40300
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
97.0588
11100
raldana-dualsentieonINDELI16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.0588
20200
raldana-dualsentieonINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.0588
20200
raldana-dualsentieonINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
97.0588
30300
qzeng-customINDELI16_PLUSmap_l250_m2_e0homalt
0.0000
0.0000
97.0588
00010
0.0000
bgallagher-sentieonINDELD16_PLUSmap_l125_m2_e0het
95.2381
100.0000
90.9091
97.0549
2002020
0.0000
astatham-gatkINDELD16_PLUSmap_l100_m0_e0het
84.4720
89.4737
80.0000
97.0545
1721640
0.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_diTR_51to200het
75.5556
62.9630
94.4444
97.0540
17101711
100.0000
asubramanian-gatkINDELI1_5map_l250_m1_e0*
88.1188
83.9623
92.7083
97.0525
89178970
0.0000
gduggal-snapvardSNPtilowcmp_SimpleRepeat_triTR_51to200*
37.5000
75.0000
25.0000
97.0516
62390
0.0000
raldana-dualsentieonINDEL*map_l250_m0_e0*
91.8239
93.5897
90.1235
97.0513
7357380
0.0000
ltrigg-rtg2INDEL*map_l150_m2_e1hetalt
90.4762
82.6087
100.0000
97.0501
1942000
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_51to200*
94.1176
100.0000
88.8889
97.0492
80810
0.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
89.4309
80.8824
100.0000
97.0478
55135500
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
53.3333
97.0472
00875
71.4286
ckim-vqsrSNP*map_l250_m1_e0*
57.9563
41.1520
97.9565
97.0469
297242502972620
0.0000
ltrigg-rtg1INDELC1_5map_l125_m1_e0*
0.0000
0.0000
100.0000
97.0464
001400
astatham-gatkINDELD6_15map_l250_m2_e0het
100.0000
100.0000
100.0000
97.0464
1401400
jli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
96.5517
93.3333
100.0000
97.0464
1411400
anovak-vgINDELD6_15map_l250_m2_e1het
77.7385
78.5714
76.9231
97.0455
1131032
66.6667
ckim-dragenINDELD16_PLUSmap_l100_m0_e0het
74.6228
89.4737
64.0000
97.0449
1721691
11.1111
ckim-vqsrSNPtimap_l250_m2_e1*
59.7117
42.8487
98.4608
97.0448
217529012175340
0.0000
jpowers-varprowlINDELI6_15map_l250_m2_e1*
57.1429
50.0000
66.6667
97.0443
44422
100.0000
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.0443
60600
hfeng-pmm2INDELI16_PLUSmap_l150_m2_e1*
90.9091
90.9091
90.9091
97.0430
1011010
0.0000
jli-customINDELD16_PLUSmap_l125_m2_e1homalt
88.8889
100.0000
80.0000
97.0414
40410
0.0000
jpowers-varprowlINDELI6_15map_l250_m1_e0*
50.0000
42.8571
60.0000
97.0414
34322
100.0000
ndellapenna-hhgaINDEL*map_l150_m0_e0hetalt
87.5000
77.7778
100.0000
97.0414
72500
asubramanian-gatkSNPtimap_l150_m0_e0het
34.9037
21.1497
99.8148
97.0413
10784019107822
100.0000
jlack-gatkINDEL*map_l250_m2_e0*
90.6780
96.9789
85.1459
97.0399
32110321564
7.1429
ckim-gatkINDELD1_5map_l250_m1_e0het
88.8000
100.0000
79.8561
97.0394
1110111281
3.5714
ndellapenna-hhgaINDELD1_5segduphetalt
73.7490
59.6154
96.6667
97.0385
31212911
100.0000
hfeng-pmm2INDELI16_PLUSmap_l125_m0_e0het
85.7143
100.0000
75.0000
97.0370
30310
0.0000
gduggal-snapfbINDELI1_5map_l250_m2_e1hetalt
66.6667
100.0000
50.0000
97.0370
20220
0.0000
gduggal-snapplatINDEL*segduphet
76.3682
71.8281
81.5210
97.0363
1053413114726013
5.0000
bgallagher-sentieonINDELD16_PLUSmap_l125_m2_e1*
91.5254
96.4286
87.0968
97.0363
2712740
0.0000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_51to200*
93.8776
88.4615
100.0000
97.0361
2332300
ckim-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200*
93.8776
88.4615
100.0000
97.0361
2332300
ckim-vqsrSNPtimap_l250_m2_e0*
59.5430
42.6717
98.4793
97.0358
213728712137330
0.0000