PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16401-16450 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | het | 69.6152 | 53.9336 | 98.1544 | 97.0778 | 1755 | 1499 | 1755 | 33 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 84.8485 | 100.0000 | 73.6842 | 97.0769 | 1 | 0 | 14 | 5 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 97.0760 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | het | 87.8788 | 78.3784 | 100.0000 | 97.0760 | 29 | 8 | 30 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m1_e0 | * | 91.9255 | 97.0492 | 87.3156 | 97.0758 | 296 | 9 | 296 | 43 | 4 | 9.3023 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | het | 68.0455 | 52.2397 | 97.5648 | 97.0733 | 2484 | 2271 | 2484 | 62 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 97.0732 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 92.3077 | 85.7143 | 100.0000 | 97.0732 | 6 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0732 | 6 | 1 | 6 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 97.0732 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 94.8276 | 91.6667 | 98.2143 | 97.0727 | 55 | 5 | 55 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 92.3077 | 97.0721 | 0 | 0 | 24 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0721 | 13 | 0 | 13 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0721 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | * | 92.4051 | 93.5897 | 91.2500 | 97.0717 | 73 | 5 | 73 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.0711 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.0711 | 7 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 97.0696 | 0 | 0 | 8 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 97.0690 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.0684 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.2857 | 52.9412 | 81.8182 | 97.0667 | 9 | 8 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.5766 | 54.7619 | 24.2105 | 97.0652 | 23 | 19 | 23 | 72 | 1 | 1.3889 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 97.0646 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | het | 77.5862 | 63.3803 | 100.0000 | 97.0646 | 45 | 26 | 45 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l150_m2_e0 | * | 91.8919 | 100.0000 | 85.0000 | 97.0631 | 17 | 0 | 17 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.0588 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.0588 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0588 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.0588 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.0588 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.0588 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 97.0588 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.0588 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 44.4444 | 97.0588 | 0 | 0 | 4 | 5 | 0 | 0.0000 | |