PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
16301-16350 / 86044 show all
jpowers-varprowlINDELI6_15map_l250_m2_e1het
60.0000
60.0000
60.0000
97.1264
32322
100.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_51to200*
66.6667
100.0000
50.0000
97.1264
80551
20.0000
ckim-vqsrSNP*map_l250_m2_e1*
59.3854
42.5817
98.0963
97.1254
340145863401660
0.0000
dgrover-gatkINDELD6_15map_l250_m2_e0het
100.0000
100.0000
100.0000
97.1253
1401400
astatham-gatkINDELD6_15map_l250_m2_e1het
100.0000
100.0000
100.0000
97.1253
1401400
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
48.4429
34.1463
83.3333
97.1246
14271533
100.0000
gduggal-snapfbINDELI1_5map_l250_m2_e1homalt
95.7447
97.8261
93.7500
97.1240
4514532
66.6667
ciseli-customINDELI16_PLUSmap_l100_m2_e1*
6.6667
3.8462
25.0000
97.1223
125131
33.3333
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_51to200*
78.5714
68.7500
91.6667
97.1223
1151111
100.0000
ltrigg-rtg1INDELC1_5map_l100_m2_e1hetalt
0.0000
0.0000
100.0000
97.1223
00400
ltrigg-rtg2INDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
97.1223
00400
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_diTR_51to200het
71.4286
58.8235
90.9091
97.1204
1071010
0.0000
eyeh-varpipeINDELC1_5map_l150_m2_e1*
0.0000
0.0000
93.1034
97.1202
002720
0.0000
ckim-dragenINDEL*map_l250_m0_e0homalt
96.0000
96.0000
96.0000
97.1198
2412411
100.0000
anovak-vgINDELC1_5map_l100_m2_e0het
0.0000
0.0000
28.5714
97.1193
00250
0.0000
jlack-gatkINDELD6_15map_l250_m2_e0*
91.3043
95.4545
87.5000
97.1188
2112130
0.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m1_e0*
96.4286
100.0000
93.1034
97.1173
2702720
0.0000
gduggal-bwavardSNPtilowcmp_SimpleRepeat_diTR_51to200*
57.1429
62.5000
52.6316
97.1168
1061090
0.0000
ghariani-varprowlINDELD6_15map_l250_m2_e0*
90.9091
90.9091
90.9091
97.1166
2022021
50.0000
ckim-vqsrSNP*map_l250_m2_e0*
59.1976
42.3843
98.1210
97.1166
334245433342640
0.0000
ciseli-customINDELI1_5map_l250_m1_e0het
53.5433
56.6667
50.7463
97.1158
3426343326
78.7879
jmaeng-gatkINDELD16_PLUSmap_l150_m0_e0het
87.5000
100.0000
77.7778
97.1154
70720
0.0000
dgrover-gatkINDEL*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.1154
60600
jli-customINDELI6_15map_l150_m0_e0het
57.1429
50.0000
66.6667
97.1154
22211
100.0000
dgrover-gatkINDELD16_PLUSmap_l150_m1_e0*
87.5000
93.3333
82.3529
97.1138
1411430
0.0000
gduggal-bwavardINDELD16_PLUSmap_l250_m2_e1*
46.1538
60.0000
37.5000
97.1119
32352
40.0000
ckim-isaacINDELI1_5map_l250_m2_e0*
74.4444
59.2920
100.0000
97.1108
67466700
astatham-gatkINDELD16_PLUSmap_l125_m2_e0het
93.0233
100.0000
86.9565
97.1106
2002030
0.0000
bgallagher-sentieonINDELD16_PLUSmap_l150_m2_e1*
89.4737
94.4444
85.0000
97.1098
1711730
0.0000
gduggal-snapfbINDELI1_5map_l250_m2_e0homalt
95.6522
97.7778
93.6170
97.1095
4414432
66.6667
ckim-vqsrINDELD1_5map_l250_m2_e0*
92.5532
94.5652
90.6250
97.1080
17410174181
5.5556
ckim-vqsrSNP*map_l125_m2_e0hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNP*map_l125_m2_e1hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNPtvmap_l125_m2_e0hetalt
37.8378
23.3333
100.0000
97.1074
723700
ckim-vqsrSNPtvmap_l125_m2_e1hetalt
37.8378
23.3333
100.0000
97.1074
723700
astatham-gatkINDELD16_PLUSmap_l125_m0_e0*
92.3077
100.0000
85.7143
97.1074
1201220
0.0000
ltrigg-rtg1INDELC1_5map_sirenhetalt
0.0000
0.0000
85.7143
97.1074
00611
100.0000
ltrigg-rtg2INDELC1_5map_l125_m1_e0*
0.0000
0.0000
100.0000
97.1074
001400
rpoplin-dv42INDELD1_5map_l250_m0_e0homalt
96.2963
100.0000
92.8571
97.1074
1301311
100.0000
mlin-fermikitSNP*lowcmp_SimpleRepeat_diTR_51to200het
62.5000
55.5556
71.4286
97.1074
15121563
50.0000
ndellapenna-hhgaINDELI1_5map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.1061
90900
jlack-gatkINDELD16_PLUSmap_l150_m2_e0het
94.1176
100.0000
88.8889
97.1061
1601620
0.0000
jli-customINDELD1_5map_l250_m0_e0*
93.6170
95.6522
91.6667
97.1049
4424440
0.0000
jlack-gatkINDEL*map_l250_m2_e1*
90.7303
96.9970
85.2243
97.1042
32310323564
7.1429
ckim-vqsrINDELI16_PLUSmap_l125_m1_e0*
93.3333
93.3333
93.3333
97.1042
1411410
0.0000
ckim-gatkINDELI16_PLUSmap_l125_m1_e0*
93.3333
93.3333
93.3333
97.1042
1411410
0.0000
jpowers-varprowlINDELI1_5map_l250_m1_e0het
89.0756
88.3333
89.8305
97.1036
5375363
50.0000
ltrigg-rtg2INDELC1_5map_l100_m1_e0hetalt
0.0000
0.0000
100.0000
97.1014
00400
ltrigg-rtg2INDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
97.1014
00200
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.1014
10200