PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15951-16000 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.2973 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 18.7500 | 11.1111 | 60.0000 | 97.2973 | 3 | 24 | 3 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 97.2973 | 5 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 97.2973 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | homalt | 45.6637 | 29.5872 | 100.0000 | 97.2939 | 129 | 307 | 129 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.9134 | 86.7647 | 100.0000 | 97.2936 | 59 | 9 | 59 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 90.4110 | 100.0000 | 82.5000 | 97.2918 | 33 | 0 | 33 | 7 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.2918 | 40 | 2 | 40 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.2918 | 40 | 2 | 40 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | segdup | hetalt | 81.3718 | 74.6154 | 89.4737 | 97.2915 | 97 | 33 | 34 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 97.2906 | 12 | 3 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.2898 | 33 | 0 | 33 | 6 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 97.2875 | 15 | 15 | 15 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.2868 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m0_e0 | het | 92.8571 | 98.1132 | 88.1356 | 97.2861 | 52 | 1 | 52 | 7 | 1 | 14.2857 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.2835 | 16 | 1 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.2835 | 16 | 1 | 16 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | homalt | 81.2379 | 68.9655 | 98.8235 | 97.2835 | 80 | 36 | 84 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 97.2826 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m1_e0 | * | 94.8837 | 96.2264 | 93.5780 | 97.2825 | 102 | 4 | 102 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | homalt | 28.5867 | 16.6770 | 100.0000 | 97.2814 | 268 | 1339 | 268 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2810 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.2810 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 22.2222 | 97.2810 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2810 | 0 | 0 | 9 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | segdup | het | 40.6839 | 28.2528 | 72.6496 | 97.2794 | 152 | 386 | 170 | 64 | 21 | 32.8125 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 91.2863 | 99.0991 | 84.6154 | 97.2792 | 110 | 1 | 110 | 20 | 1 | 5.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.2789 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 25.0000 | 97.2789 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | * | 73.1479 | 91.0256 | 61.1399 | 97.2779 | 71 | 7 | 118 | 75 | 15 | 20.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.4444 | 97.2769 | 0 | 0 | 17 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 76.9231 | 83.3333 | 71.4286 | 97.2763 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 76.9231 | 83.3333 | 97.2758 | 20 | 6 | 20 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | het | 83.3333 | 93.7500 | 75.0000 | 97.2752 | 15 | 1 | 15 | 5 | 1 | 20.0000 | |
| ghariani-varprowl | INDEL | * | segdup | * | 89.4068 | 90.3756 | 88.4586 | 97.2748 | 2310 | 246 | 2307 | 301 | 223 | 74.0864 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | het | 69.4952 | 54.0984 | 97.1429 | 97.2741 | 66 | 56 | 68 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.2727 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 81.4815 | 91.6667 | 73.3333 | 97.2727 | 11 | 1 | 11 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.3333 | 25.9259 | 66.6667 | 97.2727 | 7 | 20 | 2 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 13.3333 | 97.2727 | 0 | 0 | 2 | 13 | 2 | 15.3846 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 97.2727 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2705 | 0 | 0 | 11 | 0 | 0 | ||