PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15901-15950 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3118 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.3105 | 11 | 0 | 11 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 97.3098 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3094 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l150_m0_e0 | * | 90.9091 | 100.0000 | 83.3333 | 97.3094 | 4 | 0 | 5 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3085 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e1 | * | 92.5714 | 97.2973 | 88.2834 | 97.3082 | 324 | 9 | 324 | 43 | 4 | 9.3023 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.3077 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.1918 | 71.4286 | 96.7742 | 97.3067 | 30 | 12 | 30 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 67.3274 | 61.9565 | 73.7179 | 97.3052 | 114 | 70 | 115 | 41 | 14 | 34.1463 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 71.1864 | 97.3047 | 0 | 1 | 42 | 17 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 71.1864 | 97.3047 | 0 | 1 | 42 | 17 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.3042 | 49 | 4 | 49 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 59.4595 | 50.0000 | 73.3333 | 97.3022 | 4 | 4 | 11 | 4 | 1 | 25.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.3009 | 40 | 2 | 40 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.4865 | 76.1905 | 100.0000 | 97.2996 | 32 | 10 | 32 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | het | 40.0000 | 25.0000 | 100.0000 | 97.2973 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 97.2973 | 2 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.2973 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 2 | 5 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.2973 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 97.2973 | 2 | 6 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 97.2973 | 11 | 2 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 85.7143 | 97.2973 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | map_l100_m0_e0 | hetalt | 25.0000 | 14.2857 | 100.0000 | 97.2973 | 2 | 12 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.2973 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | het | 10.5263 | 6.6667 | 25.0000 | 97.2973 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.0000 | 16.6667 | 25.0000 | 97.2973 | 1 | 5 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.2973 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.2973 | 2 | 2 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.2973 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.2973 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 4 | 0 | 4 | 0 | 0 | ||