PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
15601-15650 / 86044 show all
ndellapenna-hhgaINDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.4359
30300
gduggal-snapvardINDELC6_15map_l100_m1_e0homalt
0.0000
0.0000
100.0000
97.4359
00100
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.4359
10100
jpowers-varprowlSNP*lowcmp_SimpleRepeat_triTR_51to200het
93.3333
100.0000
87.5000
97.4359
70710
0.0000
ltrigg-rtg2INDELC1_5lowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
100.0000
97.4359
00200
ltrigg-rtg2INDELC1_5map_l100_m2_e0hetalt
0.0000
0.0000
100.0000
97.4359
00400
ltrigg-rtg2INDELC6_15segduphetalt
0.0000
0.0000
100.0000
97.4359
00200
hfeng-pmm2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
97.4359
10100
hfeng-pmm1INDELI16_PLUSmap_l100_m2_e0homalt
90.9091
100.0000
83.3333
97.4359
50510
0.0000
hfeng-pmm1INDELI16_PLUSmap_l100_m2_e1homalt
90.9091
100.0000
83.3333
97.4359
50510
0.0000
jlack-gatkINDELD16_PLUSmap_l125_m0_e0het
90.0000
100.0000
81.8182
97.4359
90920
0.0000
jlack-gatkINDELD1_5map_l150_m2_e1hetalt
93.3333
87.5000
100.0000
97.4359
71700
jli-customINDELD16_PLUSmap_l250_m1_e0*
100.0000
100.0000
100.0000
97.4359
40400
jli-customINDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
97.4359
21200
hfeng-pmm3INDELI6_15map_l250_m2_e0*
71.4286
62.5000
83.3333
97.4359
53511
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
95.0000
90.4762
100.0000
97.4342
3843800
ckim-vqsrSNP*lowcmp_SimpleRepeat_diTR_51to200*
95.0000
90.4762
100.0000
97.4342
3843800
gduggal-snapfbINDELI1_5map_l250_m0_e0het
93.3333
93.3333
93.3333
97.4315
1411411
100.0000
gduggal-snapfbSNPtvmap_l250_m0_e0homalt
94.7644
93.7824
95.7672
97.4314
1811218183
37.5000
gduggal-bwaplatINDELD1_5map_l150_m0_e0*
63.2075
46.3668
99.2593
97.4310
13415513410
0.0000
gduggal-bwaplatINDELD16_PLUSmap_l150_m2_e1het
76.9231
62.5000
100.0000
97.4293
1061000
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
90.0000
81.8182
100.0000
97.4286
3683600
ltrigg-rtg2INDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
97.4286
001800
qzeng-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
62.5000
83.3333
50.0000
97.4277
51440
0.0000
jlack-gatkINDELI6_15map_l150_m0_e0*
87.5000
87.5000
87.5000
97.4277
71710
0.0000
cchapple-customINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
66.6667
97.4271
001054
80.0000
ckim-isaacINDELI6_15map_l150_m1_e0*
38.7097
24.0000
100.0000
97.4265
619700
ckim-vqsrINDEL*map_l250_m2_e0*
93.4524
94.8640
92.0821
97.4260
31417314272
7.4074
jmaeng-gatkINDELD16_PLUSsegduphet
93.3333
100.0000
87.5000
97.4260
3703552
40.0000
astatham-gatkINDELD16_PLUSmap_l150_m2_e1*
91.8919
94.4444
89.4737
97.4255
1711720
0.0000
bgallagher-sentieonINDELD16_PLUSmap_l250_m1_e0*
80.0000
100.0000
66.6667
97.4249
40420
0.0000
gduggal-bwaplatINDEL*map_l125_m2_e0hetalt
72.7273
57.1429
100.0000
97.4249
24182400
hfeng-pmm2INDELD1_5map_l150_m1_e0hetalt
92.3077
85.7143
100.0000
97.4249
61600
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_diTR_51to200het
78.5714
64.7059
100.0000
97.4239
1161100
jmaeng-gatkINDELI16_PLUSmap_l150_m1_e0*
90.9091
90.9091
90.9091
97.4239
1011010
0.0000
asubramanian-gatkINDELD16_PLUSmap_l150_m2_e1het
87.5000
87.5000
87.5000
97.4235
1421420
0.0000
ckim-dragenINDELD6_15map_l250_m2_e1homalt
90.9091
83.3333
100.0000
97.4227
51500
gduggal-bwavardINDELC16_PLUSmap_l100_m2_e1*
0.0000
0.0000
20.0000
97.4227
00140
0.0000
ltrigg-rtg1INDELC1_5map_l125_m2_e0*
0.0000
0.0000
100.0000
97.4217
001400
asubramanian-gatkINDELD1_5map_l250_m0_e0homalt
92.3077
92.3077
92.3077
97.4206
1211210
0.0000
bgallagher-sentieonINDEL*map_l250_m0_e0homalt
94.1176
96.0000
92.3077
97.4206
2412421
50.0000
gduggal-bwavardINDELD6_15map_l250_m1_e0*
85.7143
83.3333
88.2353
97.4203
1531521
50.0000
gduggal-bwavardINDELI1_5map_l250_m2_e0het
85.5453
95.4545
77.5000
97.4202
63362184
22.2222
gduggal-bwafbINDEL*map_l125_m0_e0hetalt
90.0000
81.8182
100.0000
97.4194
92400
anovak-vgINDELC1_5map_l150_m1_e0het
0.0000
0.0000
50.0000
97.4194
00220
0.0000
hfeng-pmm2INDELI16_PLUSsegduphetalt
100.0000
100.0000
100.0000
97.4194
40400
hfeng-pmm1INDELI6_15map_l250_m2_e1het
66.6667
60.0000
75.0000
97.4194
32311
100.0000
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
78.9474
68.1818
93.7500
97.4194
30143022
100.0000
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
69.9588
55.9211
93.4066
97.4184
85678561
16.6667
asubramanian-gatkINDELD16_PLUSmap_l125_m1_e0*
90.5660
88.8889
92.3077
97.4181
2432420
0.0000