PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15551-15600 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4654 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.4654 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4654 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | het | 46.5116 | 34.4828 | 71.4286 | 97.4638 | 10 | 19 | 5 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l250_m1_e0 | het | 69.6080 | 54.2105 | 97.2222 | 97.4636 | 103 | 87 | 105 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 97.4630 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 80.0000 | 70.5882 | 97.4627 | 12 | 3 | 12 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4619 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.4619 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.4576 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 100.0000 | 97.4576 | 0 | 0 | 3 | 0 | 0 | ||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 97.4576 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 33.3333 | 33.3333 | 97.4576 | 2 | 4 | 2 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4576 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.7500 | 64.7059 | 73.3333 | 97.4576 | 11 | 6 | 11 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4560 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 97.7778 | 100.0000 | 95.6522 | 97.4558 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.4555 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 93.9655 | 96.4602 | 91.5966 | 97.4551 | 109 | 4 | 109 | 10 | 2 | 20.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 90.3226 | 100.0000 | 82.3529 | 97.4551 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4533 | 15 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | segdup | hetalt | 75.0000 | 75.0000 | 75.0000 | 97.4522 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | het | 87.4251 | 79.3478 | 97.3333 | 97.4507 | 73 | 19 | 73 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 93.7500 | 88.2353 | 100.0000 | 97.4490 | 15 | 2 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | homalt | 63.6364 | 46.6667 | 100.0000 | 97.4476 | 28 | 32 | 28 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | het | 83.9329 | 83.3333 | 84.5411 | 97.4454 | 175 | 35 | 175 | 32 | 3 | 9.3750 | |
| ltrigg-rtg1 | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 97.4441 | 0 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 97.4432 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | * | 92.4051 | 93.5897 | 91.2500 | 97.4416 | 73 | 5 | 73 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m0_e0 | het | 76.1905 | 88.8889 | 66.6667 | 97.4414 | 8 | 1 | 8 | 4 | 1 | 25.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.4400 | 16 | 1 | 16 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 92.0152 | 99.1803 | 85.8156 | 97.4396 | 121 | 1 | 121 | 20 | 1 | 5.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 92.6829 | 86.3636 | 100.0000 | 97.4392 | 19 | 3 | 20 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | * | 93.2749 | 95.7958 | 90.8832 | 97.4381 | 319 | 14 | 319 | 32 | 4 | 12.5000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 45.5959 | 38.9381 | 55.0000 | 97.4367 | 44 | 69 | 44 | 36 | 27 | 75.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.4359 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 88.8889 | 97.4359 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.4359 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.4359 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.4359 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4359 | 0 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.4359 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 2 | 0 | 2 | 0 | 0 | ||