PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
15551-15600 / 86044 show all
ckim-gatkINDELI16_PLUSmap_l150_m1_e0*
90.9091
90.9091
90.9091
97.4654
1011010
0.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_diTR_51to200het
71.4286
58.8235
90.9091
97.4654
1071010
0.0000
ckim-vqsrINDELI16_PLUSmap_l150_m1_e0*
90.9091
90.9091
90.9091
97.4654
1011010
0.0000
gduggal-snapplatINDELD6_15map_l125_m0_e0het
46.5116
34.4828
71.4286
97.4638
1019520
0.0000
ckim-isaacINDEL*map_l250_m1_e0het
69.6080
54.2105
97.2222
97.4636
1038710533
100.0000
cchapple-customINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
0.0000
91.6667
97.4630
001111
100.0000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
75.0000
80.0000
70.5882
97.4627
1231250
0.0000
asubramanian-gatkINDELI16_PLUSmap_l100_m1_e0homalt
100.0000
100.0000
100.0000
97.4619
50500
jli-customINDELD16_PLUSmap_l250_m2_e0*
100.0000
100.0000
100.0000
97.4619
50500
hfeng-pmm3INDELI16_PLUSmap_l125_m0_e0homalt
80.0000
100.0000
66.6667
97.4576
20210
0.0000
bgallagher-sentieonINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
97.4576
30300
ltrigg-rtg2INDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
0.0000
100.0000
97.4576
00300
jpowers-varprowlSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.4576
60600
dgrover-gatkINDELD16_PLUSmap_l250_m0_e0*
50.0000
100.0000
33.3333
97.4576
10120
0.0000
ciseli-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
33.3333
33.3333
33.3333
97.4576
24243
75.0000
raldana-dualsentieonINDELD1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
97.4576
30300
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_diTR_51to200het
68.7500
64.7059
73.3333
97.4576
1161140
0.0000
dgrover-gatkINDELD1_5map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.4560
1301300
ckim-gatkINDELD6_15map_l250_m2_e0*
97.7778
100.0000
95.6522
97.4558
2202210
0.0000
jmaeng-gatkINDELD16_PLUSmap_l125_m2_e0*
94.7368
100.0000
90.0000
97.4555
2702730
0.0000
ckim-gatkINDELI1_5map_l250_m2_e0*
93.9655
96.4602
91.5966
97.4551
1094109102
20.0000
jlack-gatkINDELD6_15map_l250_m2_e1het
90.3226
100.0000
82.3529
97.4551
1401430
0.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
97.4533
1501500
ltrigg-rtg2INDELC1_5map_l100_m2_e1hetalt
0.0000
0.0000
100.0000
97.4522
00400
ltrigg-rtg2INDELC1_5map_l125_m1_e0homalt
0.0000
0.0000
100.0000
97.4522
00400
gduggal-snapvardINDELC1_5map_l250_m1_e0homalt
0.0000
0.0000
100.0000
97.4522
00400
asubramanian-gatkINDELI16_PLUSsegduphetalt
75.0000
75.0000
75.0000
97.4522
31311
100.0000
gduggal-bwaplatINDELD6_15segduphet
87.4251
79.3478
97.3333
97.4507
73197320
0.0000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200het
93.7500
88.2353
100.0000
97.4490
1521500
gduggal-bwaplatINDELD1_5map_l250_m2_e1homalt
63.6364
46.6667
100.0000
97.4476
28322800
asubramanian-gatkINDEL*map_l250_m2_e0het
83.9329
83.3333
84.5411
97.4454
17535175323
9.3750
ltrigg-rtg1INDELC1_5map_l100_m0_e0*
0.0000
0.0000
100.0000
97.4441
00800
ckim-gatkINDELD16_PLUSmap_l150_m2_e1het
94.1176
100.0000
88.8889
97.4432
1601620
0.0000
jli-customINDEL*map_l250_m0_e0*
92.4051
93.5897
91.2500
97.4416
7357372
28.5714
ckim-dragenINDELD16_PLUSmap_l125_m0_e0het
76.1905
88.8889
66.6667
97.4414
81841
25.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200het
96.9697
94.1176
100.0000
97.4400
1611600
jmaeng-gatkINDELD1_5map_l250_m2_e1het
92.0152
99.1803
85.8156
97.4396
1211121201
5.0000
asubramanian-gatkINDELD6_15map_l250_m2_e0*
92.6829
86.3636
100.0000
97.4392
1932000
jmaeng-gatkINDEL*map_l250_m2_e1*
93.2749
95.7958
90.8832
97.4381
31914319324
12.5000
ciseli-customINDELI1_5map_l250_m2_e0*
45.5959
38.9381
55.0000
97.4367
4469443627
75.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.4359
10100
bgallagher-sentieonINDELI6_15map_l150_m0_e0het
75.0000
75.0000
75.0000
97.4359
31311
100.0000
cchapple-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
0.0000
0.0000
88.8889
97.4359
00811
100.0000
anovak-vgINDELC1_5map_l150_m0_e0het
0.0000
0.0000
50.0000
97.4359
00110
0.0000
anovak-vgINDELD16_PLUSmap_l125_m2_e1homalt
66.6667
50.0000
100.0000
97.4359
22200
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
97.4359
10111
100.0000
eyeh-varpipeINDELC6_15map_l100_m0_e0homalt
0.0000
0.0000
100.0000
97.4359
00100
dgrover-gatkINDELD16_PLUSmap_l125_m2_e0homalt
80.0000
100.0000
66.6667
97.4359
40420
0.0000
raldana-dualsentieonINDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
97.4359
20200
raldana-dualsentieonINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.4359
20200