PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15351-15400 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 97.5610 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 97.5610 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e0 | * | 33.3333 | 20.0000 | 100.0000 | 97.5610 | 3 | 12 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 97.5610 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | * | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 97.5610 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 97.5610 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.5610 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.5610 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 97.5610 | 3 | 1 | 3 | 0 | 0 | ||
| ciseli-custom | INDEL | C6_15 | * | het | 50.0000 | 42.8571 | 60.0000 | 97.5610 | 3 | 4 | 18 | 12 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 6 | 0 | 6 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | het | 57.3348 | 40.2965 | 99.3367 | 97.5609 | 1196 | 1772 | 1198 | 8 | 2 | 25.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 81.3204 | 72.2826 | 92.9412 | 97.5589 | 133 | 51 | 158 | 12 | 10 | 83.3333 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.1364 | 66.6667 | 88.7417 | 97.5582 | 2 | 1 | 134 | 17 | 1 | 5.8824 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.3582 | 78.9474 | 77.7778 | 97.5577 | 15 | 4 | 14 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 41.6667 | 50.0000 | 35.7143 | 97.5567 | 5 | 5 | 5 | 9 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e0 | het | 69.7358 | 54.2857 | 97.4790 | 97.5555 | 114 | 96 | 116 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | het | 78.7879 | 65.0000 | 100.0000 | 97.5549 | 39 | 21 | 39 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 5.8824 | 97.5540 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.3333 | 91.3043 | 95.4545 | 97.5528 | 42 | 4 | 42 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.5524 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.0741 | 66.6667 | 83.3333 | 97.5510 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5510 | 0 | 0 | 18 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 97.5506 | 13 | 0 | 22 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | * | 57.7232 | 51.3514 | 65.9004 | 97.5500 | 171 | 162 | 172 | 89 | 44 | 49.4382 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | het | 82.6087 | 95.0000 | 73.0769 | 97.5495 | 19 | 1 | 19 | 7 | 2 | 28.5714 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5482 | 0 | 0 | 14 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.5469 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | het | 59.7244 | 42.6796 | 99.4358 | 97.5469 | 1408 | 1891 | 1410 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 25.0000 | 97.5460 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.5460 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.5460 | 2 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 86.9565 | 100.0000 | 76.9231 | 97.5425 | 2 | 0 | 10 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | het | 90.1961 | 94.2623 | 86.4662 | 97.5411 | 115 | 7 | 115 | 18 | 1 | 5.5556 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5410 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.5410 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 83.3333 | 83.3333 | 83.3333 | 97.5410 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | het | 92.1053 | 100.0000 | 85.3659 | 97.5405 | 37 | 0 | 35 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 5.8824 | 97.5398 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 88.0000 | 100.0000 | 78.5714 | 97.5395 | 11 | 0 | 11 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | * | 94.7368 | 95.5752 | 93.9130 | 97.5385 | 108 | 5 | 108 | 7 | 1 | 14.2857 | |