PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14901-14950 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | het | 82.0513 | 84.2105 | 80.0000 | 97.7778 | 16 | 3 | 16 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.7778 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m0_e0 | * | 77.9468 | 83.3333 | 73.2143 | 97.7734 | 20 | 4 | 41 | 15 | 3 | 20.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | het | 86.3636 | 95.0000 | 79.1667 | 97.7716 | 19 | 1 | 19 | 5 | 2 | 40.0000 | |
| ckim-dragen | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 59.0909 | 100.0000 | 41.9355 | 97.7714 | 12 | 0 | 13 | 18 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 97.7707 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | * | 75.2577 | 93.5897 | 62.9310 | 97.7692 | 73 | 5 | 73 | 43 | 2 | 4.6512 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 97.7679 | 5 | 1 | 5 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 60.0000 | 97.7679 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 85.7143 | 81.8182 | 90.0000 | 97.7679 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m0_e0 | * | 76.9231 | 83.3333 | 71.4286 | 97.7671 | 10 | 2 | 10 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | * | 94.7368 | 96.4286 | 93.1034 | 97.7658 | 27 | 1 | 27 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.7654 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.7273 | 70.5882 | 75.0000 | 97.7654 | 12 | 5 | 12 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.7654 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.7654 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 100.0000 | 71.4286 | 97.7636 | 7 | 0 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 96.2963 | 92.8571 | 100.0000 | 97.7625 | 13 | 1 | 13 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.7622 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.2381 | 100.0000 | 90.9091 | 97.7620 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7612 | 6 | 1 | 6 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 97.7612 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | * | 54.5455 | 37.5000 | 100.0000 | 97.7612 | 3 | 5 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 87.2727 | 85.7143 | 88.8889 | 97.7612 | 24 | 4 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 97.7612 | 0 | 26 | 0 | 3 | 3 | 100.0000 | ||
| cchapple-custom | INDEL | * | map_l250_m0_e0 | het | 89.0909 | 92.4528 | 85.9649 | 97.7603 | 49 | 4 | 49 | 8 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.0930 | 70.4545 | 73.8095 | 97.7600 | 31 | 13 | 31 | 11 | 10 | 90.9091 | |
| bgallagher-sentieon | INDEL | * | map_l250_m0_e0 | * | 90.2439 | 94.8718 | 86.0465 | 97.7598 | 74 | 4 | 74 | 12 | 2 | 16.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.7591 | 3 | 3 | 8 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.6552 | 81.2500 | 100.0000 | 97.7586 | 13 | 3 | 13 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 75.6757 | 91.3043 | 64.6154 | 97.7586 | 42 | 4 | 42 | 23 | 2 | 8.6957 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.5556 | 62.9630 | 94.4444 | 97.7584 | 17 | 10 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.7578 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.7578 | 0 | 0 | 5 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | het | 48.6957 | 35.0000 | 80.0000 | 97.7578 | 7 | 13 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 86.7925 | 100.0000 | 76.6667 | 97.7578 | 1 | 0 | 23 | 7 | 5 | 71.4286 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.7578 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7578 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.7578 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 97.7564 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7564 | 7 | 0 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7564 | 7 | 0 | 7 | 0 | 0 | ||