PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
14601-14650 / 86044 show all
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
60.0000
75.0000
50.0000
97.9021
31330
0.0000
gduggal-snapvardINDELC6_15map_l125_m0_e0*
0.0000
0.0000
97.9021
00030
0.0000
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
97.9021
20210
0.0000
hfeng-pmm2INDELI16_PLUSmap_l150_m1_e0homalt
100.0000
100.0000
100.0000
97.9021
30300
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
50.0000
100.0000
33.3333
97.9021
10122
100.0000
cchapple-customINDELC16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
0.0000
0.0000
83.3333
97.9021
00511
100.0000
gduggal-bwavardINDEL*map_l250_m0_e0het
69.3878
96.2264
54.2553
97.9008
51251432
4.6512
ckim-vqsrINDELD16_PLUSmap_l150_m2_e1*
91.8919
94.4444
89.4737
97.9006
1711720
0.0000
egarrison-hhgaINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
97.8992
51500
ckim-vqsrINDELD6_15map_l250_m2_e0het
100.0000
100.0000
100.0000
97.8979
1401400
bgallagher-sentieonINDELI6_15map_l250_m2_e1*
80.0000
75.0000
85.7143
97.8979
62611
100.0000
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
39.0244
69.5652
97.8976
16251672
28.5714
bgallagher-sentieonINDELI16_PLUSmap_l150_m2_e0homalt
85.7143
100.0000
75.0000
97.8947
30310
0.0000
bgallagher-sentieonINDELI6_15map_l250_m1_e0*
76.9231
71.4286
83.3333
97.8947
52511
100.0000
asubramanian-gatkINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.8947
20200
astatham-gatkINDELI16_PLUSmap_l150_m2_e1homalt
85.7143
100.0000
75.0000
97.8947
30310
0.0000
ckim-vqsrINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.8947
20200
dgrover-gatkINDELI16_PLUSmap_l150_m2_e0homalt
85.7143
100.0000
75.0000
97.8947
30310
0.0000
ckim-dragenINDELI16_PLUSmap_l250_m1_e0het
66.6667
100.0000
50.0000
97.8947
10110
0.0000
ckim-gatkINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.8947
20200
gduggal-bwavardSNPtilowcmp_SimpleRepeat_triTR_51to200*
90.9091
100.0000
83.3333
97.8947
80510
0.0000
gduggal-bwaplatINDELI16_PLUSmap_l150_m1_e0*
30.7692
18.1818
100.0000
97.8947
29200
gduggal-snapfbINDELD1_5map_l150_m2_e0hetalt
72.7273
57.1429
100.0000
97.8947
43400
gduggal-snapfbINDELD1_5map_l250_m2_e1hetalt
80.0000
66.6667
100.0000
97.8947
21200
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
68.8525
61.7647
77.7778
97.8947
4226421211
91.6667
ltrigg-rtg1INDELC1_5map_l125_m2_e1hetalt
0.0000
0.0000
100.0000
97.8947
00200
hfeng-pmm2INDELI6_15map_l250_m2_e0*
71.4286
62.5000
83.3333
97.8947
53511
100.0000
ckim-vqsrINDEL*map_l250_m2_e1het
91.0345
93.8389
88.3929
97.8943
19813198261
3.8462
gduggal-snapplatINDELD1_5map_l250_m1_e0het
80.9816
79.2793
82.7586
97.8940
882396205
25.0000
gduggal-snapvardINDELC1_5map_l250_m2_e1het
0.0000
0.0000
20.0000
97.8939
005201
5.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_diTR_51to200*
89.6552
81.2500
100.0000
97.8930
1331300
jlack-gatkINDELI16_PLUSmap_l100_m1_e0homalt
80.0000
80.0000
80.0000
97.8903
41410
0.0000
jlack-gatkINDEL*map_l250_m1_e0hetalt
90.9091
83.3333
100.0000
97.8903
51500
jmaeng-gatkINDELD16_PLUSmap_l125_m2_e1homalt
88.8889
100.0000
80.0000
97.8903
40410
0.0000
gduggal-bwavardINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
0.0000
0.0000
20.0000
97.8903
00140
0.0000
ciseli-customINDELI1_5map_l250_m2_e1homalt
28.0702
17.3913
72.7273
97.8887
838831
33.3333
jmaeng-gatkINDELD6_15map_l250_m2_e0het
100.0000
100.0000
100.0000
97.8884
1401400
ltrigg-rtg1INDELC6_15segdup*
0.0000
0.0000
83.3333
97.8873
00510
0.0000
ghariani-varprowlINDELI6_15map_l250_m2_e1het
54.5455
60.0000
50.0000
97.8873
32332
66.6667
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.8873
60600
ckim-vqsrINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.8873
30300
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
97.8873
21211
100.0000
ckim-gatkINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.8873
30300
ckim-dragenINDELI1_5map_l250_m0_e0*
92.0000
95.8333
88.4615
97.8862
2312331
33.3333
dgrover-gatkINDELI6_15map_l250_m2_e0*
80.0000
75.0000
85.7143
97.8852
62611
100.0000
ltrigg-rtg2INDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
97.8836
40400
astatham-gatkINDELI16_PLUSmap_l150_m2_e0homalt
85.7143
100.0000
75.0000
97.8836
30310
0.0000
gduggal-bwavardINDELC16_PLUSmap_l100_m2_e0*
0.0000
0.0000
25.0000
97.8836
00130
0.0000
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
36.4238
22.7273
91.6667
97.8799
10341110
0.0000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
97.8799
01061
16.6667