PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
14551-14600 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | * | map_l250_m2_e1 | * | 75.9087 | 66.0661 | 89.1975 | 97.9280 | 220 | 113 | 289 | 35 | 17 | 48.5714 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9275 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9275 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.9275 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 97.9261 | 23 | 4 | 23 | 0 | 0 | ||
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0000 | 85.1852 | 100.0000 | 97.9261 | 23 | 4 | 23 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | het | 64.9682 | 48.1132 | 100.0000 | 97.9260 | 51 | 55 | 51 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.9239 | 5 | 1 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 97.9239 | 0 | 0 | 6 | 0 | 0 | ||
| qzeng-custom | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9228 | 7 | 0 | 7 | 0 | 0 | ||
| qzeng-custom | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9228 | 7 | 0 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.9167 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 3 | 0 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 97.9167 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.9167 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.9167 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 97.9167 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.9167 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9167 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 75.0000 | 60.0000 | 97.9167 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.9167 | 0 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.9167 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 50.0000 | 45.4545 | 55.5556 | 97.9167 | 10 | 12 | 10 | 8 | 2 | 25.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 97.9167 | 0 | 7 | 0 | 1 | 1 | 100.0000 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.9655 | 58.8235 | 83.3333 | 97.9130 | 10 | 7 | 10 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | * | 75.8372 | 65.8610 | 89.3750 | 97.9118 | 218 | 113 | 286 | 34 | 17 | 50.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m2_e1 | het | 97.5610 | 100.0000 | 95.2381 | 97.9084 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 97.9079 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e0 | * | 81.0811 | 88.2353 | 75.0000 | 97.9079 | 15 | 2 | 15 | 5 | 1 | 20.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 97.9068 | 22 | 3 | 22 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.9066 | 13 | 12 | 13 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9058 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9058 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.9058 | 5 | 3 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 97.9058 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 97.9021 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |