PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
13901-13950 / 86044 show all
ciseli-customINDELI6_15map_l150_m2_e0homalt
0.0000
0.0000
98.2759
07011
100.0000
gduggal-bwavardINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.2759
20100
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
0.0000
98.2759
04011
100.0000
jli-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2759
10100
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.2759
10100
jlack-gatkINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
98.2759
51500
jlack-gatkINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
98.2759
00011
100.0000
jlack-gatkINDEL*map_l250_m0_e0*
82.6816
94.8718
73.2673
98.2753
74474271
3.7037
jmaeng-gatkSNPtvmap_l250_m0_e0*
61.3757
45.4902
94.3089
98.2747
348417348211
4.7619
ckim-gatkSNPtvmap_l250_m0_e0*
61.2245
45.0980
95.3039
98.2741
345420345170
0.0000
gduggal-bwavardINDELC1_5map_l250_m2_e0*
0.0000
0.0000
30.7692
98.2736
00491
11.1111
ckim-dragenINDELI1_5map_l250_m0_e0het
90.3226
93.3333
87.5000
98.2721
1411420
0.0000
ciseli-customINDELC1_5map_l150_m2_e0*
0.0000
0.0000
10.0000
98.2699
00190
0.0000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
98.2684
20221
50.0000
qzeng-customINDELD6_15map_l250_m1_e0het
67.3077
63.6364
71.4286
98.2673
741042
50.0000
gduggal-snapfbINDELI1_5map_l250_m0_e0*
93.6170
91.6667
95.6522
98.2642
2222211
100.0000
egarrison-hhgaINDELI1_5map_l250_m0_e0het
86.6667
86.6667
86.6667
98.2639
1321320
0.0000
egarrison-hhgaINDEL*map_l100_m0_e0*
97.3109
97.1209
97.5016
98.2621
15184515223911
28.2051
jpowers-varprowlINDELD16_PLUSmap_l125_m1_e0*
82.3529
77.7778
87.5000
98.2621
2162132
66.6667
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
81.4815
73.3333
91.6667
98.2609
1141111
100.0000
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
81.4815
73.3333
91.6667
98.2609
1141111
100.0000
hfeng-pmm2INDELI16_PLUSmap_l250_m1_e0het
66.6667
100.0000
50.0000
98.2609
10110
0.0000
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
98.2609
21200
qzeng-customINDEL*map_l250_m2_e0het
76.6664
69.0476
86.1751
98.2597
145651873016
53.3333
gduggal-snapvardINDELI1_5map_l250_m0_e0het
70.5302
86.6667
59.4595
98.2596
13222153
20.0000
qzeng-customINDEL*map_l250_m1_e0het
77.2075
70.0000
86.0697
98.2587
133571732815
53.5714
egarrison-hhgaINDEL*map_l125_m2_e0*
98.0153
97.7687
98.2633
98.2577
21474921503814
36.8421
gduggal-snapplatINDEL*map_l100_m2_e1hetalt
21.2999
12.8788
61.5385
98.2562
1711516105
50.0000
astatham-gatkINDELI16_PLUSmap_l100_m0_e0homalt
80.0000
100.0000
66.6667
98.2558
20210
0.0000
dgrover-gatkINDELI16_PLUSmap_l100_m0_e0homalt
80.0000
100.0000
66.6667
98.2558
20210
0.0000
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
80.0000
100.0000
66.6667
98.2558
20211
100.0000
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
28.5714
25.0000
33.3333
98.2558
13122
100.0000
ckim-dragenINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
90.3226
93.3333
87.5000
98.2552
1411422
100.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_diTR_51to200het
82.3529
70.0000
100.0000
98.2544
73700
qzeng-customINDELI6_15map_l250_m1_e0het
53.3333
50.0000
57.1429
98.2544
22431
33.3333
jlack-gatkINDELI6_15map_l150_m0_e0het
75.0000
75.0000
75.0000
98.2533
31310
0.0000
jlack-gatkSNP*segduphetalt
93.3333
100.0000
87.5000
98.2533
70711
100.0000
jlack-gatkSNPtvsegduphetalt
93.3333
100.0000
87.5000
98.2533
70711
100.0000
anovak-vgINDEL*map_l250_m0_e0het
64.3289
71.6981
58.3333
98.2533
3815423012
40.0000
gduggal-snapplatINDELD1_5map_l100_m1_e0hetalt
31.2500
21.2766
58.8235
98.2528
10371074
57.1429
hfeng-pmm1INDELI1_5map_l250_m0_e0het
92.8571
86.6667
100.0000
98.2527
1321300
ndellapenna-hhgaINDEL*map_l125_m1_e0*
97.7659
97.5320
98.0010
98.2503
20555220594215
35.7143
jmaeng-gatkINDELI1_5map_l250_m2_e1het
91.7293
92.4242
91.0448
98.2502
6156160
0.0000
jmaeng-gatkINDELD16_PLUSmap_l250_m2_e1*
83.3333
100.0000
71.4286
98.2500
50520
0.0000
ciseli-customINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
0.0000
0.0000
60.0000
98.2487
00640
0.0000
cchapple-customINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
0.0000
0.0000
90.0000
98.2487
00911
100.0000
asubramanian-gatkSNPtimap_l250_m1_e0*
32.0381
19.0871
99.6579
98.2478
874370587431
33.3333
asubramanian-gatkINDELI16_PLUSmap_l125_m2_e0homalt
100.0000
100.0000
100.0000
98.2456
30300
asubramanian-gatkINDELI16_PLUSmap_l125_m2_e1homalt
100.0000
100.0000
100.0000
98.2456
30300
astatham-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100