PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
13201-13250 / 86044 show all
anovak-vgINDELI6_15map_l250_m0_e0het
0.0000
0.0000
98.7179
00010
0.0000
asubramanian-gatkINDELD6_15map_l250_m0_e0homalt
66.6667
50.0000
100.0000
98.7179
11100
cchapple-customINDELC16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
98.7179
00100
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7179
10100
hfeng-pmm1INDELD16_PLUSmap_l150_m1_e0homalt
0.0000
0.0000
98.7179
00010
0.0000
ciseli-customINDELI16_PLUSmap_l125_m2_e1*
0.0000
0.0000
98.7179
015011
100.0000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.7179
11100
ciseli-customINDELC6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
0.0000
98.7179
00010
0.0000
jmaeng-gatkINDELD6_15map_l250_m0_e0het
100.0000
100.0000
100.0000
98.7179
40400
ltrigg-rtg2INDELC1_5map_l150_m2_e0hetalt
0.0000
0.0000
100.0000
98.7179
00100
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7179
10100
eyeh-varpipeINDELD1_5map_l250_m1_e0hetalt
80.0000
66.6667
100.0000
98.7179
21200
ckim-isaacINDELD16_PLUSmap_l250_m1_e0*
40.0000
25.0000
100.0000
98.7179
13100
ckim-vqsrINDELD6_15map_l250_m0_e0het
100.0000
100.0000
100.0000
98.7179
40400
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.7179
11100
ndellapenna-hhgaINDEL*segdup*
97.8664
97.7308
98.0024
98.7178
24985825025137
72.5490
rpoplin-dv42INDEL*map_l125_m2_e0*
98.0800
97.6321
98.5321
98.7156
21445221483213
40.6250
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7118
80800
gduggal-bwavardINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
50.0000
98.7097
00110
0.0000
astatham-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7076
80800
ckim-isaacINDELI6_15map_l150_m2_e0het
33.3333
20.0000
100.0000
98.7069
312300
gduggal-snapplatSNPtilowcmp_SimpleRepeat_quadTR_51to200het
17.8082
19.6970
16.2500
98.7063
135313672
2.9851
ndellapenna-hhgaINDEL*map_l150_m1_e0*
97.6748
97.2347
98.1189
98.7054
1301371304259
36.0000
ckim-vqsrINDELI6_15map_l250_m1_e0*
83.3333
71.4286
100.0000
98.7047
52500
asubramanian-gatkSNPtvmap_l250_m2_e0het
31.0570
18.4021
99.4429
98.7043
357158335720
0.0000
egarrison-hhgaINDEL*map_l150_m2_e1*
97.7374
97.4983
97.9777
98.7042
14033614052910
34.4828
ciseli-customINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
42.0382
33.3333
56.8966
98.7039
1233253
12.0000
asubramanian-gatkSNPtvmap_l250_m1_e0het
29.7001
17.4594
99.3631
98.7032
312147531220
0.0000
ndellapenna-hhgaINDELI6_15map_l250_m0_e0het
0.0000
0.0000
98.7013
00010
0.0000
gduggal-snapplatINDELI6_15map_l250_m1_e0het
0.0000
0.0000
98.7013
04010
0.0000
gduggal-snapvardINDELC6_15map_l150_m2_e0*
0.0000
0.0000
98.7013
00030
0.0000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
98.7013
00010
0.0000
gduggal-bwafbINDELD16_PLUSmap_l150_m2_e1homalt
0.0000
0.0000
98.7013
00011
100.0000
jlack-gatkINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7013
20200
ciseli-customINDELC1_5map_l150_m0_e0homalt
0.0000
0.0000
50.0000
98.7013
00110
0.0000
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7013
10100
ltrigg-rtg1INDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7013
60500
asubramanian-gatkSNPtvmap_l250_m2_e1het
31.3759
18.6260
99.4565
98.6990
366159936620
0.0000
ltrigg-rtg1INDELD1_5map_l150_m2_e0hetalt
83.3333
71.4286
100.0000
98.6971
52400
egarrison-hhgaINDEL*map_l150_m2_e0*
97.7239
97.5142
97.9345
98.6965
13733513752910
34.4828
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
70.7177
59.5238
87.0968
98.6964
25172743
75.0000
ckim-dragenINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.6949
80800
ckim-vqsrINDELI6_15map_l250_m2_e1*
85.7143
75.0000
100.0000
98.6928
62600
gduggal-snapplatINDELI1_5map_l250_m2_e0het
74.1935
69.6970
79.3103
98.6878
462046120
0.0000
ndellapenna-hhgaINDELD16_PLUSdecoy*
90.9091
83.3333
100.0000
98.6877
51500
qzeng-customINDELD16_PLUSmap_l150_m0_e0het
71.4286
100.0000
55.5556
98.6861
70540
0.0000
ckim-vqsrINDELI1_5map_l250_m0_e0*
86.2745
91.6667
81.4815
98.6855
2222251
20.0000
ckim-gatkINDELI1_5map_l250_m0_e0*
86.2745
91.6667
81.4815
98.6855
2222251
20.0000
ciseli-customINDELD16_PLUSmap_l250_m2_e0het
50.0000
33.3333
100.0000
98.6842
12100
ciseli-customINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
0.0000
98.6842
00010
0.0000