PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
13051-13100 / 86044 show all
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
53.3333
44.4444
66.6667
98.8235
45420
0.0000
ltrigg-rtg1INDELD1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.8235
30200
ltrigg-rtg1INDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.8235
20200
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
98.8235
00010
0.0000
gduggal-bwaplatINDELD6_15map_l150_m0_e0*
47.6190
31.2500
100.0000
98.8221
10221000
ckim-dragenINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8197
1101100
gduggal-bwavardINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
57.1429
100.0000
40.0000
98.8152
10231
33.3333
ciseli-customINDELC6_15segdup*
0.0000
0.0000
98.8142
00032
66.6667
cchapple-customINDELC6_15segdup*
0.0000
0.0000
100.0000
98.8131
00400
gduggal-bwavardINDELI1_5map_l250_m0_e0het
83.8710
86.6667
81.2500
98.8131
1321330
0.0000
qzeng-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
98.8131
10220
0.0000
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
95.2381
90.9091
100.0000
98.8124
1011000
gduggal-snapplatINDELI6_15map_l250_m2_e0het
0.0000
0.0000
98.8095
05010
0.0000
ckim-dragenINDELD16_PLUSmap_l250_m2_e1homalt
100.0000
100.0000
100.0000
98.8095
10100
ckim-dragenINDELI1_5map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
98.8095
11100
qzeng-customSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.8095
10100
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
98.8095
21100
gduggal-bwaplatINDELI1_5map_l150_m2_e1hetalt
66.6667
50.0000
100.0000
98.8038
55500
gduggal-bwaplatSNPtimap_l250_m0_e0het
49.4382
32.9764
98.7179
98.7999
30862630840
0.0000
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7993
70700
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
75.0000
66.6667
85.7143
98.7973
63610
0.0000
gduggal-snapvardINDELC6_15map_l125_m2_e0het
0.0000
0.0000
98.7952
00030
0.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7952
70700
ckim-vqsrINDELI6_15map_l250_m2_e1het
88.8889
80.0000
100.0000
98.7952
41400
ckim-isaacINDELI1_5map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
98.7952
11100
hfeng-pmm3INDELD16_PLUSmap_l150_m1_e0homalt
0.0000
0.0000
98.7952
00010
0.0000
qzeng-customINDELC1_5map_l100_m2_e0homalt
0.0000
0.0000
100.0000
98.7952
00100
qzeng-customINDELC1_5map_l100_m2_e1homalt
0.0000
0.0000
100.0000
98.7952
00100
ckim-gatkSNP*map_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.7952
12100
ckim-gatkSNPtvmap_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.7952
12100
ckim-dragenINDELD16_PLUSmap_l250_m2_e0homalt
100.0000
100.0000
100.0000
98.7952
10100
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_51to200het
18.7500
30.0000
13.6364
98.7945
373190
0.0000
ciseli-customINDEL*map_l250_m0_e0het
51.9039
49.0566
55.1020
98.7937
262727225
22.7273
gduggal-bwavardINDELC6_15segduphet
0.0000
0.0000
50.0000
98.7928
00331
33.3333
jpowers-varprowlINDELD16_PLUSmap_l150_m1_e0*
86.6667
86.6667
86.6667
98.7923
1321321
50.0000
ltrigg-rtg2INDEL*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7923
60500
qzeng-customINDELI6_15map_l250_m0_e0*
0.0000
0.0000
75.0000
98.7915
01310
0.0000
ckim-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7897
80800
ckim-vqsrINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7897
80800
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.7893
1001000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
78.6517
71.4286
87.5000
98.7886
30123552
40.0000
astatham-gatkINDELI16_PLUSmap_l250_m0_e0*
0.0000
0.0000
98.7879
00020
0.0000
dgrover-gatkINDELI16_PLUSmap_l250_m0_e0*
0.0000
0.0000
98.7879
00020
0.0000
gduggal-bwavardINDELC16_PLUSsegdup*
0.0000
0.0000
33.3333
98.7854
00120
0.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.7849
1001000
egarrison-hhgaINDEL*map_l125_m0_e0*
97.3294
97.0522
97.6082
98.7845
85626857217
33.3333
ciseli-customINDELC1_5segdup*
0.0000
0.0000
21.0526
98.7821
004154
26.6667
ckim-gatkINDELI16_PLUSmap_l250_m1_e0het
66.6667
100.0000
50.0000
98.7805
10110
0.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7805
70700
ciseli-customINDELI16_PLUSmap_l100_m1_e0het
0.0000
0.0000
98.7805
018010
0.0000