PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12951-13000 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 98.8950 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 98.8950 | 0 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 60.0000 | 75.0000 | 98.8950 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 51.5337 | 36.8421 | 85.7143 | 98.8942 | 7 | 12 | 6 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 66.6667 | 66.6667 | 98.8930 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m2_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.8930 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 98.8909 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 98.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 98.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.8889 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 98.8889 | 0 | 5 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm1 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8889 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 98.8889 | 0 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 98.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8889 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | * | 58.8983 | 41.7417 | 100.0000 | 98.8871 | 139 | 194 | 139 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8854 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8854 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 98.8848 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 60.0000 | 75.0000 | 98.8827 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | * | 75.0000 | 60.0000 | 100.0000 | 98.8806 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.8806 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 98.8764 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.8764 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.8764 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| asubramanian-gatk | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8764 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8764 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.8764 | 1 | 2 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8764 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8764 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 98.8764 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8741 | 11 | 0 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | * | 58.5470 | 41.3897 | 100.0000 | 98.8731 | 137 | 194 | 137 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | * | 56.4706 | 39.3443 | 100.0000 | 98.8721 | 120 | 185 | 120 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8718 | 11 | 0 | 11 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8718 | 11 | 0 | 11 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 40.4040 | 47.6190 | 35.0877 | 98.8711 | 20 | 22 | 20 | 37 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8695 | 11 | 0 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 98.8636 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8636 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | * | * | 46.1538 | 30.0000 | 100.0000 | 98.8636 | 3 | 7 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.8636 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.8636 | 1 | 4 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8636 | 3 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8636 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 98.8636 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.8620 | 8 | 0 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 60.0000 | 98.8610 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.8610 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 75.0000 | 98.8604 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |