PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
12901-12950 / 86044 show all
bgallagher-sentieonINDELI16_PLUSmap_l250_m2_e1*
50.0000
100.0000
33.3333
98.9209
10120
0.0000
gduggal-snapvardINDELC6_15map_l125_m2_e0*
0.0000
0.0000
98.9209
00030
0.0000
dgrover-gatkINDELI16_PLUSmap_l250_m2_e0*
50.0000
100.0000
33.3333
98.9209
10120
0.0000
jpowers-varprowlINDELD16_PLUSmap_l125_m0_e0*
88.0000
91.6667
84.6154
98.9185
1111121
50.0000
ckim-vqsrINDELI6_15map_l250_m1_e0het
85.7143
75.0000
100.0000
98.9170
31300
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9166
1001000
gduggal-bwavardINDELC6_15segdup*
0.0000
0.0000
50.0000
98.9150
00331
33.3333
ckim-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9141
1101100
ckim-vqsrINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9141
1101100
qzeng-customINDELD1_5map_l250_m0_e0*
83.4242
73.9130
95.7447
98.9135
34124522
100.0000
rpoplin-dv42INDELI6_15map_l250_m0_e0*
0.0000
0.0000
98.9130
01011
100.0000
gduggal-bwavardINDELC6_15map_l150_m2_e1het
0.0000
0.0000
98.9130
00020
0.0000
asubramanian-gatkINDELI6_15map_l250_m1_e0homalt
50.0000
33.3333
100.0000
98.9130
12100
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9130
1001000
hfeng-pmm2INDELD16_PLUSmap_l150_m1_e0homalt
0.0000
0.0000
98.9130
00010
0.0000
ckim-vqsrINDELI16_PLUSmap_l250_m0_e0het
0.0000
0.0000
98.9130
00010
0.0000
ckim-vqsrINDELI16_PLUSmap_l250_m2_e1het
66.6667
100.0000
50.0000
98.9130
10110
0.0000
ckim-gatkINDELI16_PLUSmap_l250_m0_e0het
0.0000
0.0000
98.9130
00010
0.0000
ckim-gatkINDELI16_PLUSmap_l250_m2_e1het
66.6667
100.0000
50.0000
98.9130
10110
0.0000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9130
10100
gduggal-snapplatINDELI1_5map_l125_m2_e1hetalt
51.5337
36.8421
85.7143
98.9114
712611
100.0000
anovak-vgINDELD1_5map_l250_m0_e0homalt
52.6316
38.4615
83.3333
98.9111
58511
100.0000
asubramanian-gatkINDELD16_PLUSmap_l250_m2_e1het
66.6667
66.6667
66.6667
98.9091
21210
0.0000
jlack-gatkINDELI16_PLUSmap_l150_m2_e0homalt
80.0000
66.6667
100.0000
98.9071
21200
jlack-gatkINDELI16_PLUSmap_l150_m2_e1homalt
80.0000
66.6667
100.0000
98.9071
21200
eyeh-varpipeINDELD1_5map_l250_m2_e0hetalt
80.0000
66.6667
100.0000
98.9071
21200
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_51to200het
25.0000
33.3333
20.0000
98.9024
9189360
0.0000
jlack-gatkINDELI1_5map_l250_m0_e0het
78.7879
86.6667
72.2222
98.9018
1321350
0.0000
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
98.9011
10100
hfeng-pmm2SNPtisegduphetalt
100.0000
100.0000
100.0000
98.9011
20200
jli-customINDELI16_PLUSmap_l250_m2_e0*
66.6667
100.0000
50.0000
98.9011
10110
0.0000
gduggal-bwaplatSNP*map_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.9011
12100
gduggal-bwaplatSNPtvmap_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.9011
12100
gduggal-bwaplatINDELI16_PLUSmap_l125_m2_e0het
20.0000
11.1111
100.0000
98.9011
18100
gduggal-bwaplatINDELI16_PLUSmap_l125_m2_e1het
20.0000
11.1111
100.0000
98.9011
18100
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.0000
98.9011
00010
0.0000
gduggal-bwafbINDELC6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.0000
98.9011
00010
0.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9011
10100
mlin-fermikitINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
50.0000
33.3333
100.0000
98.9011
12100
qzeng-customINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
100.0000
100.0000
100.0000
98.9011
10100
ltrigg-rtg2INDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.9011
20200
ckim-dragenINDELD6_15map_l250_m0_e0homalt
66.6667
50.0000
100.0000
98.9011
11100
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
50.0000
33.3333
100.0000
98.9011
12100
ckim-isaacINDEL*map_l250_m2_e0hetalt
80.0000
66.6667
100.0000
98.9011
42200
dgrover-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9000
1101100
jmaeng-gatkINDELI1_5map_l250_m0_e0*
89.3617
87.5000
91.3043
98.8990
2132121
50.0000
ghariani-varprowlINDELD16_PLUSmap_l150_m0_e0het
93.3333
100.0000
87.5000
98.8981
70710
0.0000
gduggal-bwaplatINDELD16_PLUSmap_l250_m2_e1*
75.0000
60.0000
100.0000
98.8971
32300
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.8962
1001000
gduggal-bwafbINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
98.8950
00020
0.0000