PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12701-12750 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0566 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m0_e0 | het | 40.0000 | 25.0000 | 100.0000 | 99.0566 | 1 | 3 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.0557 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | hetalt | 36.9610 | 23.2558 | 90.0000 | 99.0548 | 10 | 33 | 9 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 100.0000 | 99.0545 | 0 | 0 | 21 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | het | 60.7261 | 43.6019 | 100.0000 | 99.0542 | 92 | 119 | 92 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0521 | 2 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 99.0521 | 2 | 2 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | * | 86.4236 | 84.2623 | 88.6986 | 99.0516 | 257 | 48 | 259 | 33 | 3 | 9.0909 | |
| asubramanian-gatk | SNP | * | map_l250_m0_e0 | * | 30.8789 | 18.2670 | 99.7442 | 99.0504 | 390 | 1745 | 390 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 85.7143 | 100.0000 | 99.0500 | 36 | 6 | 38 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 25.0000 | 25.0000 | 25.0000 | 99.0499 | 1 | 3 | 1 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | het | 58.7361 | 41.5789 | 100.0000 | 99.0493 | 79 | 111 | 79 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | hetalt | 24.6914 | 15.1515 | 66.6667 | 99.0491 | 5 | 28 | 4 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 95.6522 | 99.0488 | 0 | 0 | 22 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 33.3333 | 99.0476 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 99.0476 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.0476 | 0 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.0476 | 1 | 2 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.0476 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0463 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | hetalt | 37.6569 | 23.8095 | 90.0000 | 99.0440 | 10 | 32 | 9 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | * | 40.0000 | 25.0000 | 100.0000 | 99.0431 | 2 | 6 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 25.0000 | 25.0000 | 25.0000 | 99.0431 | 1 | 3 | 1 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | hetalt | 35.9102 | 22.5000 | 88.8889 | 99.0405 | 9 | 31 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 99.0385 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 99.0385 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 99.0385 | 2 | 1 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 99.0385 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0385 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.0385 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | het | 60.4651 | 43.3333 | 100.0000 | 99.0381 | 91 | 119 | 91 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 40.0000 | 99.0381 | 0 | 0 | 20 | 30 | 1 | 3.3333 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | * | 97.9323 | 97.4432 | 98.4263 | 99.0377 | 1372 | 36 | 1376 | 22 | 10 | 45.4545 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.0366 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | het | 73.2968 | 67.9245 | 79.5918 | 99.0360 | 36 | 17 | 39 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 54.5455 | 40.0000 | 85.7143 | 99.0358 | 6 | 9 | 6 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 99.0354 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | * | 55.6962 | 38.5965 | 100.0000 | 99.0340 | 44 | 70 | 44 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 99.0338 | 2 | 1 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 99.0338 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.0338 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | * | 97.8375 | 97.3593 | 98.3205 | 99.0326 | 1401 | 38 | 1405 | 24 | 12 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.0319 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | het | 63.9175 | 46.9697 | 100.0000 | 99.0309 | 31 | 35 | 31 | 0 | 0 | ||