PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
12551-12600 / 86044 show all
jlack-gatkINDELD16_PLUSmap_l150_m1_e0homalt
0.0000
0.0000
99.1667
00011
100.0000
hfeng-pmm1INDELI16_PLUSmap_l250_m2_e0homalt
0.0000
0.0000
99.1667
00010
0.0000
anovak-vgINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
99.1649
20222
100.0000
asubramanian-gatkSNP*map_l250_m0_e0het
31.5260
18.7251
99.6466
99.1633
282122428211
100.0000
gduggal-bwaplatINDELD16_PLUSmap_l250_m1_e0*
66.6667
50.0000
100.0000
99.1632
22200
ltrigg-rtg1INDELC1_5segduphomalt
0.0000
0.0000
100.0000
99.1632
00400
hfeng-pmm2INDELI16_PLUSmap_l250_m2_e0*
66.6667
100.0000
50.0000
99.1632
10110
0.0000
egarrison-hhgaINDEL*map_l150_m0_e0*
96.1909
95.7198
96.6667
99.1616
49222493177
41.1765
hfeng-pmm2INDELD16_PLUSmap_l150_m2_e0homalt
0.0000
0.0000
99.1597
00010
0.0000
ciseli-customINDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10het
0.0000
0.0000
44.4444
99.1597
01450
0.0000
gduggal-bwafbINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
50.0000
100.0000
33.3333
99.1549
10120
0.0000
hfeng-pmm2INDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.1549
60600
jli-customINDELI16_PLUSmap_l150_m0_e0homalt
100.0000
100.0000
100.0000
99.1525
10100
ckim-dragenINDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
99.1525
10100
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
0.0000
99.1525
01010
0.0000
gduggal-bwavardINDELC16_PLUSmap_l125_m2_e0*
0.0000
0.0000
99.1525
00010
0.0000
gduggal-bwavardINDELC16_PLUSmap_l125_m2_e1*
0.0000
0.0000
99.1525
00010
0.0000
gduggal-bwavardINDELC6_15map_l250_m2_e1*
0.0000
0.0000
99.1525
00010
0.0000
eyeh-varpipeINDELC6_15map_l150_m2_e1*
0.0000
0.0000
100.0000
99.1525
00100
eyeh-varpipeINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1525
10100
qzeng-customINDELD16_PLUSmap_l150_m1_e0homalt
0.0000
0.0000
20.0000
99.1497
00140
0.0000
ltrigg-rtg2INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
96.2963
100.0000
92.8571
99.1495
1201310
0.0000
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.1489
20200
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
99.1489
10110
0.0000
jpowers-varprowlINDELD16_PLUSdecoy*
90.9091
83.3333
100.0000
99.1482
51500
gduggal-bwavardINDELC1_5map_l250_m0_e0*
0.0000
0.0000
99.1477
00030
0.0000
gduggal-bwaplatINDELD1_5map_l150_m2_e1hetalt
66.6667
50.0000
100.0000
99.1453
44400
gduggal-bwaplatINDEL*map_l150_m0_e0hetalt
50.0000
33.3333
100.0000
99.1453
36300
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
87.5000
100.0000
99.1453
71700
mlin-fermikitSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
99.1453
11100
jmaeng-gatkINDELD1_5map_l150_m0_e0hetalt
66.6667
50.0000
100.0000
99.1453
11100
jli-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
97.5610
100.0000
95.2381
99.1418
2002010
0.0000
gduggal-snapplatINDELI1_5map_l150_m0_e0hetalt
57.1429
66.6667
50.0000
99.1416
21111
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
99.1416
20222
100.0000
ciseli-customINDELC1_5map_l100_m2_e1het
0.0000
0.0000
33.3333
99.1404
00120
0.0000
asubramanian-gatkINDEL*map_l250_m2_e1*
86.7031
84.0841
89.4904
99.1381
28053281333
9.0909
astatham-gatkINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1379
10100
ghariani-varprowlINDELI6_15map_l250_m0_e0het
0.0000
0.0000
99.1379
00010
0.0000
hfeng-pmm2INDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1379
10100
hfeng-pmm3INDELI16_PLUSmap_l250_m2_e1homalt
0.0000
0.0000
99.1379
00010
0.0000
cchapple-customINDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
99.1379
10100
dgrover-gatkINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.1379
10100
mlin-fermikitINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
85.7143
75.0000
100.0000
99.1379
62600
qzeng-customINDELC1_5map_l100_m1_e0*
0.0000
0.0000
100.0000
99.1379
00500
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
90.0000
90.0000
90.0000
99.1349
91911
100.0000
hfeng-pmm3INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
88.8889
100.0000
80.0000
99.1349
40410
0.0000
ciseli-customINDELC1_5map_l100_m2_e0het
0.0000
0.0000
33.3333
99.1329
00120
0.0000
ckim-gatkINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.1304
20200
jmaeng-gatkINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.1304
20200
gduggal-bwavardINDELC6_15map_l250_m2_e0*
0.0000
0.0000
99.1304
00010
0.0000