PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
12301-12350 / 86044 show all
jpowers-varprowlINDELD16_PLUSmap_l250_m2_e1het
85.7143
100.0000
75.0000
99.3300
30311
100.0000
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3289
20200
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.3266
20200
jpowers-varprowlINDELD16_PLUSmap_l250_m2_e0het
85.7143
100.0000
75.0000
99.3255
30311
100.0000
hfeng-pmm2INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
91.6667
91.6667
91.6667
99.3247
1111110
0.0000
jmaeng-gatkSNPtvmap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNPtvmap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNP*map_l250_m2_e0hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNP*map_l250_m2_e1hetalt
33.3333
20.0000
100.0000
99.3243
14100
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.3243
20200
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.3243
20200
ghariani-varprowlINDELD16_PLUSmap_l150_m0_e0*
93.3333
100.0000
87.5000
99.3226
70710
0.0000
hfeng-pmm3INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.3220
20200
asubramanian-gatkINDELI16_PLUSmap_l250_m2_e1het
0.0000
0.0000
99.3197
01010
0.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3197
20200
jmaeng-gatkINDELI16_PLUSmap_l250_m1_e0*
66.6667
100.0000
50.0000
99.3197
10110
0.0000
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
94.1176
88.8889
100.0000
99.3191
81800
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
95.2381
100.0000
90.9091
99.3176
1001010
0.0000
cchapple-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3174
20200
bgallagher-sentieonINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
99.3162
40400
asubramanian-gatkINDELI16_PLUSmap_l250_m2_e0het
0.0000
0.0000
99.3151
01010
0.0000
gduggal-bwavardINDELC1_5segduphet
0.0000
0.0000
61.9048
99.3151
001383
37.5000
jlack-gatkINDELD16_PLUSmap_l150_m2_e1homalt
0.0000
0.0000
99.3151
00011
100.0000
jmaeng-gatkINDELD1_5map_l250_m1_e0hetalt
50.0000
33.3333
100.0000
99.3151
12100
qzeng-customINDELC1_5segduphet
0.0000
0.0000
50.0000
99.3143
00330
0.0000
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.3127
80800
hfeng-pmm3INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
95.0000
95.0000
95.0000
99.3115
1911910
0.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
92.3077
85.7143
100.0000
99.3111
61600
bgallagher-sentieonINDELI16_PLUSmap_l250_m2_e1homalt
0.0000
0.0000
99.3103
00010
0.0000
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_triTR_51to200het
60.0000
42.8571
100.0000
99.3088
34300
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
94.7368
90.0000
100.0000
99.3088
91900
qzeng-customINDELI1_5map_l250_m0_e0het
71.7949
66.6667
77.7778
99.3080
1051443
75.0000
eyeh-varpipeINDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
100.0000
100.0000
100.0000
99.3080
10200
mlin-fermikitINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
74.4186
80.0000
69.5652
99.3068
1641674
57.1429
jpowers-varprowlINDELD16_PLUSmap_l250_m1_e0het
85.7143
100.0000
75.0000
99.3068
30311
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
63.1579
60.0000
66.6667
99.3066
64633
100.0000
astatham-gatkINDELI16_PLUSmap_l250_m2_e1homalt
0.0000
0.0000
99.3056
00010
0.0000
dgrover-gatkINDELI16_PLUSmap_l250_m2_e1homalt
0.0000
0.0000
99.3056
00010
0.0000
jli-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3056
20200
ckim-dragenINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3031
20200
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.3031
1001000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
94.4444
100.0000
89.4737
99.3012
1701720
0.0000
jlack-gatkINDELD16_PLUSmap_l150_m2_e0homalt
0.0000
0.0000
99.3007
00011
100.0000
gduggal-bwaplatINDELI6_15map_l250_m2_e1het
57.1429
40.0000
100.0000
99.3007
23200
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3007
20200
cchapple-customINDELI16_PLUSmap_l250_m2_e1het
100.0000
100.0000
100.0000
99.3007
10100
cchapple-customINDELC1_5map_l250_m0_e0het
0.0000
0.0000
100.0000
99.2958
00100
hfeng-pmm2INDELI16_PLUSmap_l250_m0_e0*
0.0000
0.0000
99.2958
00010
0.0000
jlack-gatkINDELI16_PLUSmap_l125_m0_e0homalt
66.6667
50.0000
100.0000
99.2958
11100
gduggal-snapplatINDELI1_5map_l125_m0_e0hetalt
50.0000
50.0000
50.0000
99.2958
22111
100.0000