PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11751-11800 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.7368 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.7361 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | decoy | homalt | 48.8889 | 33.3333 | 91.6667 | 99.7340 | 1 | 2 | 11 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.7326 | 3 | 2 | 3 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7319 | 1 | 1 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.7315 | 1 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7287 | 6 | 0 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.7283 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7273 | 3 | 1 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | decoy | homalt | 88.8889 | 100.0000 | 80.0000 | 99.7263 | 1 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | decoy | het | 63.4921 | 50.0000 | 86.9565 | 99.7259 | 3 | 3 | 20 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 99.7253 | 7 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.7218 | 1 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.7199 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7183 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 82.3529 | 70.0000 | 100.0000 | 99.7165 | 7 | 3 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 99.7135 | 0 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 99.7121 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.7110 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7100 | 6 | 0 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.7368 | 90.0000 | 100.0000 | 99.7088 | 9 | 1 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.7080 | 1 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 45.6361 | 81.6092 | 31.6742 | 99.7077 | 71 | 16 | 70 | 151 | 4 | 2.6490 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | homalt | 20.0000 | 11.1111 | 100.0000 | 99.7067 | 1 | 8 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7056 | 6 | 0 | 6 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.7050 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7003 | 3 | 1 | 3 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 99.6979 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 99.6970 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6970 | 2 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 99.6945 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6933 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6933 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.6924 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6914 | 2 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 92.3077 | 100.0000 | 85.7143 | 99.6897 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 33.3333 | 0.0000 | 99.6894 | 2 | 4 | 0 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 99.6894 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 99.6872 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.6855 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 99.6835 | 0 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6825 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 64.7059 | 64.7059 | 64.7059 | 99.6822 | 11 | 6 | 11 | 6 | 4 | 66.6667 | |
| ckim-dragen | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6813 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6805 | 2 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 98.2249 | 99.6798 | 0 | 0 | 166 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6795 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.6783 | 6 | 18 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6774 | 3 | 2 | 3 | 0 | 0 | ||