PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
11651-11700 / 86044 show all
hfeng-pmm1INDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8384
10100
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
61.5385
80.0000
50.0000
99.8383
82222
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8377
10100
astatham-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8374
10100
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
57.1429
40.0000
100.0000
99.8373
23200
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
64.8649
57.1429
75.0000
99.8367
43311
100.0000
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
54.3940
75.8621
42.3963
99.8352
6621921252
1.6000
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.8342
10100
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.8337
22200
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8333
10100
jmaeng-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8328
10100
hfeng-pmm3INDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8325
10100
asubramanian-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8285
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8282
10100
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8273
10100
ckim-isaacINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8267
10100
bgallagher-sentieonINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8252
10100
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
63.6364
87.5000
50.0000
99.8246
71222
100.0000
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
91.2621
100.0000
83.9286
99.8242
101412726
96.2963
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8241
20200
jli-customINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8236
10100
gduggal-snapvardINDELC1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
0.0000
27.2727
99.8229
00384
50.0000
jlack-gatkINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8224
10100
gduggal-snapplatINDEL*map_l250_m2_e1hetalt
50.0000
33.3333
100.0000
99.8221
24100
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
57.1429
40.0000
100.0000
99.8219
23200
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.8190
22200
gduggal-snapplatINDEL*map_l250_m2_e0hetalt
50.0000
33.3333
100.0000
99.8188
24100
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
99.8173
70222
100.0000
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8172
10100
eyeh-varpipeINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.8141
20700
jlack-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
52.6631
81.4516
38.9105
99.8116
101231001575
3.1847
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8107
60600
gduggal-snapvardINDELD6_15decoy*
0.0000
0.0000
50.0000
99.8106
01110
0.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8102
60600
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8102
60600
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8100
60600
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8090
60600
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.8087
60600
eyeh-varpipeINDELD6_15decoyhet
0.0000
0.0000
100.0000
99.8073
00100
gduggal-bwaplatINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.8073
10100
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
62.5000
58.8235
66.6667
99.8072
1071054
80.0000
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
0.0000
100.0000
99.8051
00200
raldana-dualsentieonINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8020
10100
gduggal-snapvardINDELD6_15decoyhet
0.0000
0.0000
50.0000
99.7998
00110
0.0000
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
77.7778
70.0000
87.5000
99.7959
73710
0.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
94.5833
99.7919
012271312
92.3077
gduggal-snapplatINDEL*map_l250_m1_e0hetalt
50.0000
33.3333
100.0000
99.7899
24100
ndellapenna-hhgaINDEL*map_l250_m0_e0*
93.7500
96.1538
91.4634
99.7895
7537571
14.2857
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.7890
11100
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
71.4286
58.8235
90.9091
99.7884
1071010
0.0000