PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11651-11700 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8384 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 61.5385 | 80.0000 | 50.0000 | 99.8383 | 8 | 2 | 2 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8377 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8374 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.8373 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.8649 | 57.1429 | 75.0000 | 99.8367 | 4 | 3 | 3 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 54.3940 | 75.8621 | 42.3963 | 99.8352 | 66 | 21 | 92 | 125 | 2 | 1.6000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8342 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8337 | 2 | 2 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8333 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8328 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8325 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8285 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8282 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8273 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8267 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8252 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 63.6364 | 87.5000 | 50.0000 | 99.8246 | 7 | 1 | 2 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 91.2621 | 100.0000 | 83.9286 | 99.8242 | 1 | 0 | 141 | 27 | 26 | 96.2963 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.8241 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8236 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 27.2727 | 99.8229 | 0 | 0 | 3 | 8 | 4 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8224 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.8221 | 2 | 4 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.8219 | 2 | 3 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8190 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.8188 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 99.8173 | 7 | 0 | 2 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8172 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.8141 | 2 | 0 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 52.6631 | 81.4516 | 38.9105 | 99.8116 | 101 | 23 | 100 | 157 | 5 | 3.1847 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8107 | 6 | 0 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.8106 | 0 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8102 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8102 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8100 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8090 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8087 | 6 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.8073 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8073 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.5000 | 58.8235 | 66.6667 | 99.8072 | 10 | 7 | 10 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.8051 | 0 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8020 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 50.0000 | 99.7998 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 77.7778 | 70.0000 | 87.5000 | 99.7959 | 7 | 3 | 7 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 94.5833 | 99.7919 | 0 | 1 | 227 | 13 | 12 | 92.3077 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7899 | 2 | 4 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | * | 93.7500 | 96.1538 | 91.4634 | 99.7895 | 75 | 3 | 75 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7890 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 71.4286 | 58.8235 | 90.9091 | 99.7884 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |