PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11401-11450 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.8225 | 67.8161 | 71.9512 | 99.9249 | 59 | 28 | 59 | 23 | 15 | 65.2174 | |
| hfeng-pmm3 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9249 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.7133 | 90.3226 | 97.3684 | 99.9248 | 112 | 12 | 111 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9246 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.9240 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| jli-custom | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9239 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9232 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9232 | 3 | 0 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.4170 | 67.7419 | 69.1057 | 99.9232 | 84 | 40 | 85 | 38 | 22 | 57.8947 | |
| hfeng-pmm3 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9223 | 10 | 0 | 10 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9217 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.4762 | 60.4839 | 73.7864 | 99.9217 | 75 | 49 | 76 | 27 | 19 | 70.3704 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.1053 | 94.3548 | 95.8678 | 99.9213 | 117 | 7 | 116 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 83.3333 | 75.0000 | 93.7500 | 99.9211 | 12 | 4 | 15 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.2454 | 92.7419 | 95.7983 | 99.9211 | 115 | 9 | 114 | 5 | 3 | 60.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.3404 | 78.1609 | 67.3267 | 99.9209 | 68 | 19 | 68 | 33 | 18 | 54.5455 | |
| jli-custom | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9207 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.9320 | 77.4194 | 94.0594 | 99.9207 | 96 | 28 | 95 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.4968 | 94.3548 | 96.6667 | 99.9204 | 117 | 7 | 116 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9201 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9200 | 10 | 0 | 10 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9196 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 25.0000 | 99.9194 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.4968 | 94.3548 | 96.6667 | 99.9192 | 117 | 7 | 116 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.9189 | 0 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.9513 | 95.9677 | 95.9350 | 99.9185 | 119 | 5 | 118 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.9077 | 80.6452 | 99.0566 | 99.9183 | 100 | 24 | 105 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.2655 | 82.2581 | 100.0000 | 99.9182 | 102 | 22 | 101 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.4082 | 79.8387 | 99.0385 | 99.9179 | 99 | 25 | 103 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.7563 | 95.1613 | 94.3548 | 99.9176 | 118 | 6 | 117 | 7 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9174 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9173 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9165 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.4864 | 63.7097 | 76.4151 | 99.9162 | 79 | 45 | 81 | 25 | 24 | 96.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 84.0909 | 99.9156 | 0 | 0 | 37 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9149 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.9147 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.4324 | 70.1149 | 100.0000 | 99.9146 | 61 | 26 | 60 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.9142 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 50.0000 | 100.0000 | 99.9132 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3170 | 80.6452 | 95.1923 | 99.9131 | 100 | 24 | 99 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 100.0000 | 99.9127 | 0 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9120 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9120 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9120 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9119 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 50.0000 | 100.0000 | 99.9118 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.9117 | 1 | 3 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | decoy | * | 66.6667 | 100.0000 | 50.0000 | 99.9115 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | decoy | * | 66.6667 | 100.0000 | 50.0000 | 99.9108 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |