PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
11001-11050 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9942 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9941 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9940 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9940 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | decoy | * | 46.1538 | 30.0000 | 100.0000 | 99.9940 | 3 | 7 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.9939 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9938 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9938 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9938 | 0 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9935 | 0 | 0 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9935 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9935 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9934 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9934 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9933 | 0 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9933 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9931 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9931 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9931 | 2 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9931 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9930 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9930 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9930 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9929 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9928 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9928 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9928 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9927 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9927 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9924 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9924 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9922 | 0 | 0 | 1 | 0 | 0 | ||