PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
10851-10900 / 86044 show all
ghariani-varprowlINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
100.0000
00000
ghariani-varprowlINDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
ghariani-varprowlINDELD16_PLUSsegdupwithalthet
0.0000
100.0000
00000
ghariani-varprowlINDELD16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
ghariani-varprowlINDELD16_PLUStech_badpromotershomalt
0.0000
100.0000
00000
rpoplin-dv42INDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9996
10100
anovak-vgSNP*decoyhet
0.0000
0.0000
99.9995
00011
100.0000
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
3.1746
1.6129
100.0000
99.9994
2122100
eyeh-varpipeSNP*segdupwithalthet
0.0000
0.0000
99.9994
00010
0.0000
ndellapenna-hhgaINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9993
10100
egarrison-hhgaINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9993
10100
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
gduggal-bwavardSNP*decoy*
0.0000
0.0000
100.0000
99.9992
00200
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
anovak-vgSNPtidecoyhet
0.0000
0.0000
99.9992
00011
100.0000
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
qzeng-customSNP*decoy*
0.0000
0.0000
100.0000
99.9992
00200
ciseli-customSNP*decoy*
0.0000
0.0000
100.0000
99.9992
00100
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9992
10100
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9991
10100
gduggal-snapvardSNP*decoy*
0.0000
0.0000
100.0000
99.9991
00200
eyeh-varpipeSNP*segdupwithalt*
0.0000
0.0000
50.0000
99.9991
00110
0.0000
anovak-vgSNP*decoy*
0.0000
0.0000
50.0000
99.9991
00111
100.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9991
10100
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9991
10100
qzeng-customSNPtvdecoy*
0.0000
0.0000
100.0000
99.9990
00100
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9990
10100
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9990
10100
eyeh-varpipeSNPtisegdupwithalthet
0.0000
0.0000
99.9990
00010
0.0000
gduggal-bwavardSNPtvdecoy*
0.0000
0.0000
100.0000
99.9989
00100
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
4.4944
2.2989
100.0000
99.9989
285100
gduggal-snapvardSNPtvdecoy*
0.0000
0.0000
100.0000
99.9988
00100
ghariani-varprowlINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9988
10100
eyeh-varpipeSNPtvsegdupwithalt*
0.0000
0.0000
100.0000
99.9988
00100
anovak-vgSNPtvdecoy*
0.0000
0.0000
99.9988
00011
100.0000
qzeng-customSNPtidecoy*
0.0000
0.0000
100.0000
99.9987
00200
eyeh-varpipeSNP*segdupwithalthomalt
0.0000
0.0000
100.0000
99.9987
00100
eyeh-varpipeSNPtisegdupwithalt*
0.0000
0.0000
50.0000
99.9987
00110
0.0000
gduggal-bwavardSNPtidecoy*
0.0000
0.0000
100.0000
99.9987
00200
ciseli-customSNPtidecoy*
0.0000
0.0000
100.0000
99.9987
00100
anovak-vgSNPtidecoy*
0.0000
0.0000
50.0000
99.9986
00111
100.0000
anovak-vgSNPtvdecoyhet
0.0000
0.0000
99.9986
00011
100.0000
gduggal-snapvardSNPtidecoy*
0.0000
0.0000
100.0000
99.9986
00200
asubramanian-gatkINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9985
10200
gduggal-snapplatINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9982
10100
jmaeng-gatkINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9982
10100
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9981
10200