PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10851-10900 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9996 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | SNP | * | decoy | het | 0.0000 | 0.0000 | 99.9995 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 3.1746 | 1.6129 | 100.0000 | 99.9994 | 2 | 122 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | segdupwithalt | het | 0.0000 | 0.0000 | 99.9994 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9993 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9993 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9992 | 0 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | SNP | ti | decoy | het | 0.0000 | 0.0000 | 99.9992 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9992 | 0 | 0 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9992 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9991 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9991 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | * | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9991 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9991 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9990 | 0 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9990 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9990 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | segdupwithalt | het | 0.0000 | 0.0000 | 99.9990 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9989 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 4.4944 | 2.2989 | 100.0000 | 99.9989 | 2 | 85 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9988 | 0 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9988 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | segdupwithalt | * | 0.0000 | 0.0000 | 100.0000 | 99.9988 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | SNP | tv | decoy | * | 0.0000 | 0.0000 | 99.9988 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| qzeng-custom | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | segdupwithalt | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9987 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | SNP | ti | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.9986 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | decoy | het | 0.0000 | 0.0000 | 99.9986 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9986 | 0 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9985 | 1 | 0 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9982 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9982 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9981 | 1 | 0 | 2 | 0 | 0 | ||