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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76151-76200 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 3 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 35.7143 | 0.0000 | 0.0000 | 5 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 34.4828 | 0.0000 | 0.0000 | 10 | 19 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 36.6667 | 0.0000 | 0.0000 | 11 | 19 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 35.4839 | 0.0000 | 0.0000 | 11 | 20 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 3 | 5 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 8 | 16 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 26.6667 | 0.0000 | 0.0000 | 4 | 11 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 26.6667 | 0.0000 | 0.0000 | 4 | 11 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 26.6667 | 0.0000 | 0.0000 | 4 | 11 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 1 | 3 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 20.0000 | 0.0000 | 0.0000 | 1 | 4 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_siren | hetalt | 0.0000 | 29.8246 | 0.0000 | 0.0000 | 17 | 40 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | * | hetalt | 0.0000 | 14.4661 | 0.0000 | 0.0000 | 126 | 745 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | HG002complexvar | hetalt | 0.0000 | 15.8065 | 0.0000 | 0.0000 | 49 | 261 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 14.6172 | 0.0000 | 0.0000 | 126 | 736 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | func_cds | hetalt | 0.0000 | 30.0000 | 0.0000 | 0.0000 | 3 | 7 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 23.0769 | 0.0000 | 0.0000 | 3 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||