PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
75851-75900 / 86044 show all
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDEL**hetalt
0.0000
93.6165
0.0000
0.0000
236261611000
cchapple-customINDEL*HG002complexvarhetalt
0.0000
90.1865
0.0000
0.0000
3336363000
cchapple-customINDEL*HG002compoundhethetalt
0.0000
93.6418
0.0000
0.0000
235791601000
cchapple-customINDEL*decoyhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customINDEL*func_cdshetalt
0.0000
80.0000
0.0000
0.0000
41000
cchapple-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
86.5063
0.0000
0.0000
3308516000
cchapple-customINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
95.5114
0.0000
0.0000
14725692000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
93.7863
0.0000
0.0000
156671038000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
86.8263
0.0000
0.0000
14522000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
96.1373
0.0000
0.0000
2249000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
95.4545
0.0000
0.0000
1266000