PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71851-71900 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 38.3929 | 0.0000 | 0.0000 | 43 | 69 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 36.6667 | 0.0000 | 0.0000 | 22 | 38 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 24.6835 | 0.0000 | 0.0000 | 156 | 476 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 54.7020 | 0.0000 | 0.0000 | 2542 | 2105 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 59.2455 | 0.0000 | 0.0000 | 2387 | 1642 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 54.1073 | 0.0000 | 0.0000 | 2582 | 2190 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 50.9584 | 0.0000 | 0.0000 | 3004 | 2891 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 62.8647 | 0.0000 | 0.0000 | 2392 | 1413 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 8.3799 | 0.0000 | 0.0000 | 15 | 164 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 83.8608 | 0.0000 | 0.0000 | 265 | 51 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 55.8407 | 0.0000 | 0.0000 | 631 | 499 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 27.1889 | 0.0000 | 0.0000 | 59 | 158 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 70.6070 | 0.0000 | 0.0000 | 221 | 92 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 30.4348 | 0.0000 | 0.0000 | 7 | 16 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 40.9091 | 0.0000 | 0.0000 | 18 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 40.9091 | 0.0000 | 0.0000 | 18 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 40.0000 | 0.0000 | 0.0000 | 18 | 27 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 41.1765 | 0.0000 | 0.0000 | 7 | 10 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 42.1053 | 0.0000 | 0.0000 | 8 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 42.1053 | 0.0000 | 0.0000 | 8 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 5 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 36.6071 | 0.0000 | 0.0000 | 41 | 71 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | segdup | hetalt | 0.0000 | 39.5833 | 0.0000 | 0.0000 | 19 | 29 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | * | hetalt | 0.0000 | 15.6042 | 0.0000 | 0.0000 | 1334 | 7215 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 16.5303 | 0.0000 | 0.0000 | 202 | 1020 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 15.5829 | 0.0000 | 0.0000 | 1330 | 7205 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||