PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1433 1434 1435 1436 1437 1438 1439 1440 1441 ... 1720 1721 » 71801-71850 / 86044 show all
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt		0.0000	0.0000	0.0000	0	28	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	175	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	23	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000	0.0000	0.0000	0	13	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt		0.0000	0.0000	0.0000	0	8	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l100_m0_e0	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l100_m1_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l125_m0_e0	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l125_m1_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l125_m2_e0	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l125_m2_e1	hetalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l150_m0_e0	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l150_m0_e0	homalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l150_m1_e0	homalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l150_m2_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l150_m2_e0	homalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l150_m2_e1	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l150_m2_e1	homalt		0.0000	0.0000	0.0000	0	3	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l250_m0_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l250_m1_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l250_m1_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	map_siren	hetalt		0.0000	0.0000	0.0000	0	16	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	segdup	hetalt		0.0000	0.0000	0.0000	0	4	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I16_PLUS	tech_badpromoters	homalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapvard	INDEL	I1_5	*	hetalt	0.0000	36.5106	0.0000	0.0000	4087	7107	0	0	0
gduggal-snapvard	INDEL	I1_5	HG002complexvar	hetalt	0.0000	41.9710	0.0000	0.0000	724	1001	0	0	0
gduggal-snapvard	INDEL	I1_5	HG002compoundhet	hetalt	0.0000	36.5157	0.0000	0.0000	4081	7095	0	0	0
gduggal-snapvard	INDEL	I1_5	decoy	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I1_5	func_cds	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	0.0000	25.4181	0.0000	0.0000	228	669	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	58.8176	0.0000	0.0000	3492	2445	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	50.9584	0.0000	0.0000	3004	2891	0	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	36.9048	0.0000	0.0000	31	53	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge