PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
71751-71800 / 86044 show all | |||||||||||||||
gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 38.2353 | 0.0000 | 0.0000 | 26 | 42 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 38.2353 | 0.0000 | 0.0000 | 26 | 42 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 35.6164 | 0.0000 | 0.0000 | 26 | 47 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 3 | 3 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 57.8947 | 0.0000 | 0.0000 | 11 | 8 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 57.8947 | 0.0000 | 0.0000 | 11 | 8 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 55.0000 | 0.0000 | 0.0000 | 11 | 9 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 60.0000 | 0.0000 | 0.0000 | 3 | 2 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 36.3636 | 0.0000 | 0.0000 | 36 | 63 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | segdup | hetalt | 0.0000 | 55.1020 | 0.0000 | 0.0000 | 27 | 22 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | homalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 1 | 5 | 1 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.4290 | 0.0000 | 0.0000 | 9 | 2089 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 335 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.4300 | 0.0000 | 0.0000 | 9 | 2084 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 86 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 583 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 659 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 35 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 59 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 341 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 286 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 380 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 659 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 279 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 |