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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1315 1316 1317 1318 1319 1320 1321 1322 1323 ... 1720 1721 » 65901-65950 / 86044 show all
gduggal-bwafb	SNP	ti	HG002complexvar	het	99.7807	99.7408	99.8207	18.4948	313950	816	314019	564	202	35.8156
ckim-gatk	SNP	ti	HG002complexvar	homalt	99.3341	98.6902	99.9864	18.4846	190929	2534	190919	26	23	88.4615
bgallagher-sentieon	SNP	*	HG002complexvar	het	99.9449	99.9235	99.9662	18.4844	465141	356	465011	157	50	31.8471
jmaeng-gatk	SNP	ti	HG002complexvar	homalt	99.3419	98.7072	99.9848	18.4737	190962	2501	190952	29	26	89.6552
hfeng-pmm1	SNP	ti	HG002complexvar	homalt	99.9845	99.9798	99.9891	18.4732	193424	39	193416	21	21	100.0000
cchapple-custom	SNP	tv	*	homalt	99.9396	99.8847	99.9947	18.4432	376688	435	376084	20	17	85.0000
jli-custom	SNP	*	HG002complexvar	het	99.9263	99.8859	99.9667	18.4399	464966	531	464872	155	54	34.8387
hfeng-pmm3	SNP	ti	HG002complexvar	homalt	99.9848	99.9773	99.9922	18.4374	193419	44	193409	15	15	100.0000
gduggal-bwafb	SNP	ti	HG002complexvar	*	99.8223	99.7766	99.8681	18.4222	507301	1136	507384	670	291	43.4328
mlin-fermikit	SNP	*	func_cds	het	99.3878	98.9159	99.8643	18.4193	11040	121	11040	15	0	0.0000
raldana-dualsentieon	SNP	*	*	*	99.9260	99.9131	99.9389	18.4181	3051965	2654	3051826	1867	97	5.1955
ltrigg-rtg1	SNP	*	HG002complexvar	het	99.8148	99.6788	99.9511	18.4181	464005	1495	464235	227	59	25.9912
ndellapenna-hhga	SNP	ti	HG002complexvar	homalt	99.8705	99.8403	99.9007	18.4130	193154	309	193175	192	171	89.0625
rpoplin-dv42	SNP	ti	HG002complexvar	homalt	99.9574	99.9530	99.9617	18.4113	193372	91	193367	74	72	97.2973
bgallagher-sentieon	SNP	ti	*	het	99.9232	99.9613	99.8851	18.4052	1281395	496	1281341	1474	76	5.1560
egarrison-hhga	SNP	ti	HG002complexvar	homalt	99.8937	99.8480	99.9395	18.4037	193169	294	193188	117	94	80.3419
jpowers-varprowl	SNP	ti	*	homalt	99.8713	99.9620	99.7807	18.3988	802733	305	802784	1764	1014	57.4830
egarrison-hhga	SNP	*	*	het	99.8773	99.8048	99.9499	18.3927	1869930	3657	1869954	938	124	13.2196
egarrison-hhga	SNP	*	HG002complexvar	het	99.7873	99.6172	99.9580	18.3902	463715	1782	463738	195	79	40.5128
ltrigg-rtg2	SNP	*	HG002complexvar	het	99.8358	99.7414	99.9305	18.3888	464296	1204	464515	323	94	29.1022
jli-custom	SNP	ti	HG002complexvar	homalt	99.9648	99.9478	99.9819	18.3860	193362	101	193356	35	26	74.2857
ciseli-custom	SNP	ti	HG002complexvar	het	96.3296	95.9112	96.7516	18.3708	301896	12870	299422	10053	353	3.5114
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.3971	98.8014	100.0000	18.3616	577	7	578	0	0
hfeng-pmm3	SNP	*	*	*	99.9548	99.9339	99.9756	18.3516	3052601	2018	3052460	744	76	10.2151
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8285	99.6575	100.0000	18.3473	582	2	583	0	0
eyeh-varpipe	SNP	*	HG002complexvar	*	99.8557	99.8989	99.8126	18.3366	753622	763	699806	1314	293	22.2983
ckim-isaac	SNP	tv	*	*	98.3371	96.7926	99.9317	18.3312	938596	31102	938905	642	418	65.1090
egarrison-hhga	SNP	*	*	*	99.8985	99.8365	99.9607	18.3304	3049624	4995	3049677	1199	305	25.4379
raldana-dualsentieon	SNP	ti	HG002complexvar	homalt	99.9811	99.9726	99.9897	18.3281	193410	53	193401	20	20	100.0000
dgrover-gatk	SNP	ti	HG002complexvar	homalt	99.9661	99.9447	99.9876	18.3249	193356	107	193346	24	24	100.0000
rpoplin-dv42	SNP	*	HG002complexvar	het	99.8978	99.8245	99.9712	18.3215	464680	817	464534	134	101	75.3731
bgallagher-sentieon	SNP	ti	HG002complexvar	homalt	99.9695	99.9514	99.9876	18.3190	193369	94	193359	24	24	100.0000
astatham-gatk	SNP	ti	HG002complexvar	homalt	99.9545	99.9214	99.9876	18.3169	193311	152	193301	24	24	100.0000
ckim-dragen	SNP	ti	HG002complexvar	homalt	99.9527	99.9214	99.9840	18.3095	193311	152	193417	31	31	100.0000
ndellapenna-hhga	SNP	*	HG002complexvar	het	99.7473	99.5353	99.9601	18.3091	463334	2163	463353	185	79	42.7027
jli-custom	SNP	*	*	*	99.9382	99.9603	99.9160	18.2994	3053407	1212	3053302	2566	212	8.2619
eyeh-varpipe	SNP	*	HG002complexvar	homalt	99.9303	99.9127	99.9480	18.2871	288323	252	263218	137	103	75.1825
qzeng-custom	SNP	ti	HG002complexvar	*	99.1315	98.4529	99.8194	18.2769	500571	7866	493623	893	400	44.7928
gduggal-bwavard	SNP	ti	HG002complexvar	*	98.2991	97.1039	99.5241	18.2603	493712	14725	485576	2322	1599	68.8630
gduggal-bwafb	SNP	ti	HG002complexvar	homalt	99.8904	99.8351	99.9457	18.2578	193145	319	193159	105	88	83.8095
ltrigg-rtg1	SNP	ti	HG002complexvar	homalt	99.9028	99.8341	99.9715	18.2456	193142	321	193049	55	54	98.1818
jlack-gatk	SNP	ti	HG002complexvar	homalt	99.9491	99.9163	99.9819	18.2375	193301	162	193290	35	32	91.4286
eyeh-varpipe	SNP	*	HG002complexvar	het	99.8105	99.8904	99.7307	18.2348	464990	510	429610	1160	174	15.0000
rpoplin-dv42	SNP	*	*	homalt	99.9769	99.9716	99.9821	18.2100	1179826	335	1179802	211	157	74.4076
hfeng-pmm3	SNP	*	HG002complexvar	het	99.8290	99.6758	99.9825	18.2080	463988	1509	463859	81	16	19.7531
ndellapenna-hhga	SNP	*	*	het	99.8554	99.7670	99.9441	18.2036	1869221	4366	1869241	1046	128	12.2371
egarrison-hhga	SNP	*	*	homalt	99.9329	99.8872	99.9785	18.1960	1178830	1331	1178859	253	173	68.3794
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5701	99.1438	100.0000	18.1946	579	5	580	0	0
rpoplin-dv42	SNP	ti	*	het	99.9511	99.9279	99.9742	18.1937	1280967	924	1280907	330	164	49.6970
jpowers-varprowl	SNP	ti	HG002complexvar	het	99.4252	98.9938	99.8603	18.1914	311597	3167	311707	436	90	20.6422

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