PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
65801-65850 / 86044 show all
ckim-gatkSNP*HG002complexvar*
99.5695
99.1746
99.9675
19.4723
7481546227748002243101
41.5638
ltrigg-rtg2SNPtv**
99.8284
99.8825
99.7743
19.4672
96855711399688102192110
5.0183
anovak-vgSNPtv*homalt
99.0679
98.8237
99.3132
19.4559
372687443637134125681960
76.3240
ckim-dragenSNP*HG002complexvar*
99.9301
99.9223
99.9379
19.4552
753795586754278469236
50.3198
anovak-vgSNP*HG002complexvar*
97.6964
96.9184
98.4870
19.4533
73113823247712315109438438
77.1087
gduggal-snapplatSNPtiHG002complexvarhomalt
99.0919
98.3790
99.8152
19.4474
1903283136190130352203
57.6705
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
87.7870
78.7671
99.1398
19.4107
46012446144
100.0000
ciseli-customSNPtiHG002complexvarhomalt
96.5088
99.0536
94.0915
19.4065
1916331831189105118755178
43.6042
jlack-gatkSNP*HG002complexvar*
99.9118
99.8944
99.9292
19.3948
753584797753425534201
37.6404
raldana-dualsentieonSNPtifunc_cdshomalt
99.9905
99.9810
100.0000
19.3825
52741527400
gduggal-snapfbSNPtiHG002complexvarhomalt
99.6542
99.7054
99.6030
19.3776
192894570192940769240
31.2094
ltrigg-rtg2SNPtv*homalt
99.9678
99.9486
99.9870
19.3650
3769271943769514941
83.6735
anovak-vgSNP*HG002complexvarhet
97.3572
96.6062
98.1199
19.3647
4497021579843902284126308
74.9881
cchapple-customSNPti**
99.8773
99.8866
99.8679
19.3368
2083147236420819362754477
17.3203
cchapple-customSNPtifunc_cdshomalt
99.9621
99.9242
100.0000
19.3326
52714527000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
47.3186
31.7661
92.7083
19.3277
2775958976
85.7143
mlin-fermikitSNPtv**
98.7665
98.1308
99.4104
19.3147
9515721812695150656434116
72.9399
ckim-isaacSNPtvHG002complexvar*
95.4727
91.5159
99.7871
19.3101
22527120884225437481401
83.3680
ckim-vqsrSNP*HG002complexvarhet
99.0965
98.2281
99.9803
19.3098
45724982484571249032
35.5556
ckim-isaacSNPtv*het
98.4858
97.0571
99.9572
19.2906
5742911741357457624632
13.0081
astatham-gatkSNP*HG002complexvar*
99.1835
98.3938
99.9860
19.2643
7422641211774211210462
59.6154
dgrover-gatkSNP***
99.9456
99.9631
99.9282
19.2565
3053492112730533432195207
9.4305
gduggal-snapvardSNPtv*homalt
99.4119
98.9054
99.9237
19.2463
3729954128370593283154
54.4170
asubramanian-gatkSNPti**
99.0306
98.1234
99.9548
19.2315
204637539136204631692690
9.7192
raldana-dualsentieonSNP**het
99.8865
99.8694
99.9036
19.2179
187114124461871016180643
2.3810
gduggal-snapfbINDELD6_15HG002compoundhethet
60.7617
44.3925
96.2540
19.2156
3804765730223211
94.6188
hfeng-pmm2SNP**het
99.9111
99.8854
99.9369
19.2150
187143921481871315118142
3.5563
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.2235
98.4589
100.0000
19.2146
575957600
jmaeng-gatkSNP*HG002complexvarhet
99.7155
99.4778
99.9544
19.1665
463066243146293821165
30.8057
jlack-gatkSNP*HG002complexvarhet
99.8914
99.8855
99.8973
19.1615
464964533464834478152
31.7992
ckim-dragenSNP*HG002complexvarhet
99.9146
99.9212
99.9081
19.1598
465130367465401428195
45.5607
gduggal-bwaplatSNPtiHG002complexvarhomalt
98.4485
97.0077
99.9328
19.1570
1876745789187425126109
86.5079
ciseli-customINDELI1_5func_cdshomalt
91.8455
89.9160
93.8596
19.1489
1071210776
85.7143
gduggal-snapvardINDELI1_5func_cdshomalt
96.1113
93.2773
99.1228
19.1489
111811311
100.0000
gduggal-snapplatSNP**homalt
99.3703
98.8374
99.9089
19.1469
11664421372011662141063359
33.7723
gduggal-snapfbSNPti*homalt
99.7832
99.8062
99.7602
19.1162
80148315568015321927269
13.9595
ckim-gatkSNP*HG002complexvarhet
99.7401
99.5255
99.9558
19.1024
463288220946316020569
33.6585
gduggal-snapfbINDELI6_15HG002compoundhethet
56.6000
41.8269
87.5070
19.0965
871214686669652
97.4589
mlin-fermikitSNP*func_cds*
99.4453
99.2617
99.6295
19.0809
18016134180166748
71.6418
eyeh-varpipeSNPti**
99.7598
99.9651
99.5553
19.0734
208479172720610839206307
3.3348
rpoplin-dv42SNP***
99.9587
99.9447
99.9728
19.0681
305293016893052766832433
52.0433
asubramanian-gatkSNP*HG002complexvarhet
98.3318
96.7914
99.9221
19.0611
4505611493645044235131
8.8319
dgrover-gatkSNP*HG002complexvar*
99.9517
99.9260
99.9773
19.0606
75382355875366817188
51.4620
astatham-gatkSNP***
99.5934
99.2091
99.9807
19.0428
3030461241583030315584162
27.7397
gduggal-bwavardSNPtv*homalt
99.4965
99.0327
99.9647
19.0358
373475364837122013186
65.6489
ciseli-customSNP**homalt
98.7740
99.5427
98.0170
19.0299
1174765539711681212363210880
46.0393
ckim-isaacSNPtifunc_cds*
99.4788
98.9918
99.9707
19.0273
136481391364842
50.0000
bgallagher-sentieonSNP*HG002complexvar*
99.9538
99.9332
99.9744
19.0217
75387750475372219384
43.5233
jli-customSNP*HG002complexvar*
99.9396
99.9065
99.9727
19.0201
75367670575356520691
44.1748
qzeng-customSNPtifunc_cdshomalt
99.8860
99.8673
99.9047
18.9998
52687524353
60.0000