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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
65701-65750 / 86044 show all
gduggal-bwavardSNPtifunc_cdshomalt
99.6099
99.2227
100.0000
20.4486
523441521300
dgrover-gatkSNP**het
99.9216
99.9564
99.8868
20.4479
187277081718726452122144
6.7861
eyeh-varpipeSNPtvHG002complexvarhomalt
99.9220
99.9001
99.9440
20.4163
9501695891805038
76.0000
qzeng-customSNPtv*homalt
99.5964
99.2947
99.8999
20.4155
3744632660372209373242
64.8794
eyeh-varpipeSNPtvHG002complexvarhet
99.6993
99.8812
99.5181
20.4147
15055517914248069071
10.2899
anovak-vgSNP*func_cdshomalt
99.1150
98.8967
99.3342
20.4124
69027768634641
89.1304
ckim-vqsrSNP*HG002complexvarhomalt
98.2744
96.6168
99.9900
20.3688
27881197632787872826
92.8571
ckim-gatkSNPtv*homalt
99.5305
99.0738
99.9914
20.3623
37363034933736163219
59.3750
asubramanian-gatkSNP*HG002complexvarhomalt
98.0724
96.2540
99.9608
20.3588
2777641081027774010923
21.1009
ciseli-customSNP*HG002complexvarhet
95.7970
95.7987
95.7952
20.3525
4459431955743953919293621
3.2188
eyeh-varpipeSNP***
99.4670
99.9638
98.9751
20.3427
30535271107299971231063471
1.5163
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
98.4293
96.9072
100.0000
20.3390
9439400
jpowers-varprowlSNP**homalt
99.8292
99.9606
99.6981
20.3193
1179696465117982235732211
61.8808
gduggal-bwafbSNPti**
99.8083
99.8659
99.7507
20.3177
2082722279620828585206495
9.5083
jmaeng-gatkSNPtv*homalt
99.5328
99.0793
99.9904
20.3157
37365134723736373623
63.8889
mlin-fermikitSNPtvHG002complexvarhet
98.0988
96.3081
99.9573
20.3091
1451695565145103629
14.5161
ltrigg-rtg2SNPtifunc_cdshomalt
99.9526
99.9052
100.0000
20.2844
52705527000
ckim-dragenSNPti**
99.8327
99.9538
99.7120
20.2602
208454796420848166022378
6.2770
asubramanian-gatkSNPtv*homalt
98.7491
97.5342
99.9946
20.2324
36782492993678102017
85.0000
qzeng-customSNP*HG002complexvarhomalt
99.2256
98.6350
99.8233
20.2251
2846363939274538486380
78.1893
gduggal-snapplatSNPtifunc_cdshomalt
99.7435
99.5071
99.9810
20.2128
524926524911
100.0000
gduggal-bwavardSNP*HG002complexvarhet
98.2730
97.3044
99.2610
20.1947
4529521254844165932882162
65.7543
mlin-fermikitSNPtv*homalt
98.8702
98.8876
98.8528
20.1908
372928419537292343284101
94.7551
gduggal-bwafbSNP*HG002complexvarhet
99.7664
99.7319
99.8010
20.1804
4642521248464384926324
34.9892
astatham-gatkSNP**het
99.3521
98.7393
99.9725
20.1637
184996723620184984550895
18.7008
ckim-vqsrSNPtifunc_cdshomalt
99.7910
99.5829
100.0000
20.1550
525322525300
asubramanian-gatkSNPtifunc_cdshomalt
99.7244
99.4502
100.0000
20.1522
524629524600
gduggal-snapfbSNPtiHG002complexvarhet
99.0494
99.5771
98.5273
20.1517
31343513313138974692557
11.8713
ckim-isaacSNPtifunc_cdshet
99.5275
99.0828
99.9763
20.1440
842678842620
0.0000
ckim-dragenSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.1424
52732527300
ckim-isaacSNP*func_cds*
99.4183
98.8760
99.9666
20.1352
179462041794662
33.3333
ckim-gatkSNPtifunc_cdshomalt
99.9051
99.8104
100.0000
20.1183
526510526500
jmaeng-gatkSNPtifunc_cdshomalt
99.9051
99.8104
100.0000
20.1062
526510526500
jlack-gatkSNPtv*homalt
99.9678
99.9488
99.9867
20.1040
3769301933769125030
60.0000
gduggal-bwafbSNP*HG002complexvar*
99.8109
99.7664
99.8554
20.0831
75262317627527831090464
42.5688
mlin-fermikitSNP*func_cdshomalt
99.5356
99.8137
99.2590
20.0683
69661369665248
92.3077
hfeng-pmm2SNP*HG002complexvarhomalt
99.9776
99.9726
99.9827
20.0544
288495792884815044
88.0000
ckim-gatkSNP*HG002complexvarhomalt
99.2945
98.6114
99.9870
20.0389
28456740072845433731
83.7838
jpowers-varprowlSNP*HG002complexvarhet
99.3948
98.9553
99.8382
20.0313
4606324863460862747150
20.0803
jmaeng-gatkSNP*HG002complexvarhomalt
99.3008
98.6263
99.9845
20.0307
28461039642845864439
88.6364
ltrigg-rtg1SNPtv*het
99.7418
99.8465
99.6372
20.0234
590796908591027215250
2.3234
hfeng-pmm1SNP*HG002complexvarhomalt
99.9818
99.9754
99.9882
20.0017
288503712884883432
94.1176
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
87.3563
77.5510
100.0000
20.0000
38114000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
96.0000
92.3077
100.0000
20.0000
1211200
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
75.6757
60.8696
100.0000
20.0000
1491600
anovak-vgINDELI1_5lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
20.0000
00044
100.0000
asubramanian-gatkINDELC16_PLUSHG002compoundhethetalt
0.0000
0.0000
20.0000
00040
0.0000
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
82.0513
69.5652
100.0000
20.0000
1671600
ndellapenna-hhgaINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
93.0233
86.9565
100.0000
20.0000
2032000
dgrover-gatkSNPtv*homalt
99.9813
99.9706
99.9920
19.9848
3770121113769973024
80.0000