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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
65651-65700 / 86044 show all
astatham-gatkSNP*func_cdshomalt
99.9642
99.9284
100.0000
20.9745
69745697400
rpoplin-dv42SNPtv*homalt
99.9702
99.9650
99.9753
20.9652
3769911323769709351
54.8387
bgallagher-sentieonSNP*func_cdshomalt
99.9785
99.9570
100.0000
20.9518
69763697600
hfeng-pmm2SNPtv*homalt
99.9869
99.9862
99.9875
20.9465
377071523770664724
51.0638
gduggal-snapplatSNPtiHG002complexvar*
98.2167
97.8257
98.6108
20.9389
4973821105549779970131203
17.1539
gduggal-snapvardSNPtiHG002complexvarhet
97.7415
96.8929
98.6052
20.9330
304985978030044842501602
37.6941
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
90.3657
84.5361
97.0588
20.9302
82153311
100.0000
egarrison-hhgaSNPtv**
99.8815
99.8074
99.9558
20.9138
9678221868967852428112
26.1682
ndellapenna-hhgaSNPtv*homalt
99.9152
99.8722
99.9583
20.9089
376641482376648157123
78.3439
gduggal-bwavardSNPtvHG002complexvarhomalt
98.3914
96.9047
99.9244
20.9085
921672944899126835
51.4706
egarrison-hhgaSNPtv*homalt
99.9252
99.8738
99.9766
20.9039
3766474763766568860
68.1818
ltrigg-rtg1SNPtiHG002compoundhethetalt
99.9136
99.8273
100.0000
20.9016
578157900
ndellapenna-hhgaSNPtv**
99.8629
99.7865
99.9395
20.8763
9676202070967646586175
29.8635
ltrigg-rtg2SNPtifunc_cds*
99.7392
99.8622
99.6165
20.8703
137681913767531
1.8868
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
95.7447
92.7835
98.9011
20.8696
9079011
100.0000
hfeng-pmm1SNPtv**
99.9383
99.9053
99.9713
20.8629
96877291896869127843
15.4676
cchapple-customSNPtvHG002complexvarhomalt
99.8120
99.6331
99.9915
20.8601
947623499415987
87.5000
egarrison-hhgaSNPtv*het
99.8548
99.7659
99.9438
20.8578
590311138559033233244
13.2530
hfeng-pmm1SNPtv*het
99.9077
99.8553
99.9601
20.8554
59084085659076623619
8.0509
ndellapenna-hhgaSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.8377
52732527300
qzeng-customSNPti**
99.5194
99.2515
99.7887
20.8361
20699071561120631264368997
22.8251
cchapple-customSNP***
99.8448
99.8832
99.8063
20.8246
3051052356730495575917726
12.2697
hfeng-pmm1SNPtvHG002complexvarhet
99.7636
99.5469
99.9813
20.8221
150048683149969289
32.1429
mlin-fermikitSNP*HG002compoundhethetalt
97.1360
94.4316
100.0000
20.8171
8144881400
mlin-fermikitSNPtvHG002compoundhethetalt
97.1360
94.4316
100.0000
20.8171
8144881400
mlin-fermikitSNPtiHG002compoundhethetalt
97.2493
94.6459
100.0000
20.8092
5483154800
ndellapenna-hhgaSNPtv*het
99.8309
99.7335
99.9285
20.7977
590119157759013842245
10.6635
gduggal-snapvardSNPtvHG002complexvarhomalt
98.0989
96.4652
99.7889
20.7946
9174933628934818993
49.2063
mlin-fermikitSNP*HG002complexvarhomalt
98.3225
98.4247
98.2205
20.7847
284029454628404351464990
96.9685
hfeng-pmm2SNPtvHG002complexvarhet
99.7540
99.5389
99.9700
20.7785
150036695149957458
17.7778
hfeng-pmm1SNPtv*homalt
99.9869
99.9841
99.9897
20.7747
377063603770563921
53.8462
ciseli-customSNPtifunc_cdshomalt
99.3195
99.8483
98.7963
20.7719
5267852536429
45.3125
eyeh-varpipeSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.7688
52732521500
ciseli-customSNP*HG002complexvar*
95.9712
96.9985
94.9655
20.7202
73174222643718679381008358
21.9370
ltrigg-rtg1SNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.7187
52732527300
jpowers-varprowlSNP*HG002complexvar*
99.4683
99.2937
99.6435
20.7160
749051532874940426811602
59.7538
hfeng-pmm1SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.7037
52741527400
hfeng-pmm2SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.6798
52741527400
hfeng-pmm3SNPtv*homalt
99.9887
99.9854
99.9920
20.6594
377068553770603018
60.0000
ltrigg-rtg2INDELD1_5func_cdshomalt
99.3197
98.6486
100.0000
20.6522
7317300
raldana-dualsentieonSNP*func_cdshomalt
99.9928
99.9857
100.0000
20.6414
69781697800
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
98.0000
96.0784
100.0000
20.6349
4925000
gduggal-bwaplatSNPtifunc_cdshomalt
99.6481
99.2986
100.0000
20.6003
523837523800
hfeng-pmm3SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.5962
52741527400
ckim-vqsrSNPtv*homalt
98.8369
97.7055
99.9948
20.5893
36847086533684561916
84.2105
eyeh-varpipeSNPtvHG002complexvar*
99.7847
99.8883
99.6813
20.5762
245880275235205752120
15.9574
cchapple-customSNP*func_cdshomalt
99.9713
99.9427
100.0000
20.5695
69754697400
eyeh-varpipeSNPti*het
99.6284
99.9615
99.2976
20.5443
128140449312643368944171
1.9119
qzeng-customSNP*func_cdshomalt
99.8779
99.8281
99.9278
20.5349
696712691853
60.0000
gduggal-snapvardSNPtifunc_cdshomalt
99.6385
99.2986
99.9808
20.4816
523837521711
100.0000