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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
65451-65500 / 86044 show all
jlack-gatkSNPtvHG002complexvar*
99.9000
99.8932
99.9069
22.4572
24588926324579522981
35.3712
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
84.0574
73.1400
98.8060
22.4537
58021333144
100.0000
hfeng-pmm3SNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.4462
577257700
jli-customSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.4462
577257700
ckim-vqsrSNPtvHG002complexvarhet
98.9859
98.0150
99.9763
22.4456
14773929921476623514
40.0000
ciseli-customSNPtv*homalt
98.4608
99.4400
97.5007
22.4395
375011211237361095773591
37.4961
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.5768
95.8462
99.3711
22.4390
6232763244
100.0000
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
26.7835
20.7451
37.7805
22.4371
245936303499460
92.1844
eyeh-varpipeINDELI6_15HG002compoundhethomalt
2.5353
74.1935
1.2897
22.4317
2382619901987
99.8492
ltrigg-rtg2SNPtvHG002complexvarhomalt
99.9174
99.8549
99.9800
22.4289
94973138950011919
100.0000
bgallagher-sentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
bgallagher-sentieonSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
jlack-gatkSNP*HG002compoundhethetalt
99.6512
99.4200
99.8834
22.4231
857585711
100.0000
jlack-gatkSNPtvHG002compoundhethetalt
99.6512
99.4200
99.8834
22.4231
857585711
100.0000
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
32.7901
97.1831
19.7222
22.4138
69271289266
92.0415
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
96.2567
92.7835
100.0000
22.4138
9079000
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
88.8394
80.5907
98.9691
22.4000
1914619221
50.0000
anovak-vgSNPti*het
98.0963
98.0413
98.1515
22.3908
1256788251091253632236109204
38.9835
egarrison-hhgaSNPtifunc_cds*
99.9456
99.9637
99.9275
22.3817
13782513782100
0.0000
ltrigg-rtg2SNP*func_cds*
99.6865
99.8678
99.5059
22.3605
181262418125901
1.1111
gduggal-bwavardINDELD1_5func_cdshomalt
94.2857
89.1892
100.0000
22.3529
6686600
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.6279
93.5220
99.9473
22.3450
3768261379322
100.0000
gduggal-snapvardSNPti**
99.1158
98.9272
99.3052
22.3384
2063143223742054412143732372
16.5032
gduggal-snapvardSNP*HG002complexvarhet
97.7612
96.9682
98.5672
22.3358
4513861411343932463862268
35.5152
gduggal-bwavardSNPtvHG002complexvar*
98.2474
97.1213
99.3998
22.3354
23906970862343431415923
65.2297
ghariani-varprowlSNP*HG002complexvarhet
99.2312
99.6262
98.8393
22.3346
46375217404640235449138
2.5326
astatham-gatkSNPtvHG002complexvar*
99.1122
98.2547
99.9847
22.3181
24185642962417693721
56.7568
ndellapenna-hhgaSNP*func_cdshomalt
99.9857
99.9713
100.0000
22.3138
69772697700
dgrover-gatkSNPtv**
99.9211
99.9611
99.8812
22.3092
969313377969227115381
7.0252
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
45.0912
56.0811
37.7029
22.3084
8365302499460
92.1844
jlack-gatkSNPtvHG002complexvarhet
99.8776
99.8932
99.8620
22.3009
15057016115049420864
30.7692
ckim-isaacINDELI1_5func_cdshomalt
98.2906
96.6387
100.0000
22.2973
115411500
hfeng-pmm1SNPtifunc_cdshet
99.9060
99.9530
99.8590
22.2902
850048498120
0.0000
gduggal-bwaplatSNP*func_cdshomalt
99.5972
99.1976
100.0000
22.2746
692356692300
ckim-dragenSNPtvHG002complexvarhet
99.9058
99.9098
99.9019
22.2740
15059513615074014870
47.2973
jmaeng-gatkSNPtvHG002complexvarhet
99.6867
99.4221
99.9526
22.2557
1498608711497827116
22.5352
ckim-gatkSNPtiHG002compoundhethetalt
98.8646
97.7547
100.0000
22.2527
5661356600
dgrover-gatkSNPtiHG002compoundhethetalt
99.8270
99.6546
100.0000
22.2372
577257700
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.8966
96.4615
99.3750
22.2357
6272363644
100.0000
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.8966
96.4615
99.3750
22.2357
6272363644
100.0000
gduggal-bwafbSNPti*het
99.7363
99.8649
99.6080
22.2231
1280165173212802845038382
7.5824
eyeh-varpipeINDELI6_15func_cdshomalt
96.5517
93.3333
100.0000
22.2222
1411400
jmaeng-gatkSNPtiHG002compoundhethetalt
98.9529
97.9275
100.0000
22.2222
5671256700
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
22.2222
2102100
anovak-vgINDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
22.2222
71700
ciseli-customSNP*func_cdshomalt
99.2844
99.8567
98.7187
22.2148
69691069349038
42.2222
gduggal-bwafbINDELI6_15HG002compoundhethet
78.5751
65.8654
97.3628
22.2080
137715907160152
95.0000
ltrigg-rtg1INDELD16_PLUSHG002compoundhethetalt
94.9583
90.9232
99.3682
22.2073
175317517301111
100.0000
ckim-gatkSNPtvHG002complexvarhet
99.7094
99.4639
99.9560
22.1876
1499238081498456619
28.7879