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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
65201-65250 / 86044 show all
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.3167
94.8139
99.9552
24.2743
4406241445922
100.0000
ndellapenna-hhgaSNP*func_cdshet
99.9060
99.9552
99.8568
24.2730
11156511156160
0.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
99.9299
99.9300
24.2713
14261142811
100.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_11to50*
97.8395
96.2110
99.5241
24.2691
37581483764187
38.8889
astatham-gatkSNP*func_cds*
99.8621
99.7796
99.9448
24.2600
181104018107100
0.0000
hfeng-pmm2SNP*func_cds*
99.9174
99.9780
99.8569
24.2548
18146418143260
0.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.6390
96.2169
99.1037
24.2483
7633077476
85.7143
gduggal-bwaplatSNPti**
99.0047
98.3196
99.6994
24.2468
20504673504420508046183880
14.2326
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.4972
93.5639
99.6204
24.2463
757452176102929
100.0000
ckim-isaacSNP*tech_badpromotershomalt
94.7368
90.0000
100.0000
24.2105
7287200
eyeh-varpipeINDELD1_5func_cdshomalt
98.6301
97.2973
100.0000
24.2105
7227200
astatham-gatkSNPtifunc_cdshet
99.8234
99.7178
99.9293
24.2094
848024847860
0.0000
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.3061
95.4603
99.2248
24.1920
7573676866
100.0000
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
52.5500
71.5640
41.5188
24.1862
15160117016481641
99.5752
bgallagher-sentieonSNP*func_cds*
99.8899
99.9669
99.8129
24.1761
18144618141340
0.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
85.9762
77.6671
96.2761
24.1736
54615710604141
100.0000
cchapple-customSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.1656
17040170400
ckim-vqsrINDELD6_15HG002compoundhethetalt
96.9271
94.4179
99.5733
24.1268
769645577003333
100.0000
ckim-gatkINDELD6_15HG002compoundhethetalt
96.9335
94.4301
99.5733
24.1244
769745477013333
100.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
98.2100
97.1081
99.3372
24.1239
463413846463130
96.7742
bgallagher-sentieonSNPtifunc_cdshet
99.8707
99.9647
99.7769
24.1158
850138499190
0.0000
jpowers-varprowlSNPtv*homalt
99.7396
99.9576
99.5225
24.1122
37696316037703818091197
66.1692
ciseli-customSNPtvHG002complexvarhet
94.7007
95.5637
93.8531
24.0959
14404766871433239387273
2.9083
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.0672
96.6017
99.5778
24.0929
659523266042827
96.4286
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0246
94.5657
99.6148
24.0847
645637164652525
100.0000
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
85.1178
74.4266
99.3958
24.0826
64922365844
100.0000
gduggal-bwafbSNP*HG002compoundhethetalt
99.8259
99.7680
99.8839
24.0741
860286011
100.0000
gduggal-bwafbSNPtvHG002compoundhethetalt
99.8259
99.7680
99.8839
24.0741
860286011
100.0000
jmaeng-gatkINDELD6_15HG002compoundhethetalt
96.5549
93.6940
99.5959
24.0546
763751476413131
100.0000
hfeng-pmm3INDELD6_15HG002compoundhethetalt
96.8362
93.8781
99.9869
24.0528
7652499765610
0.0000
ciseli-customSNPtifunc_cds*
98.7839
99.4488
98.1278
24.0438
13711761368026131
11.8774
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
98.5228
98.3122
98.7342
24.0385
233423433
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5763
99.1561
100.0000
24.0385
235223700
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.5198
93.2738
100.0000
24.0209
3758271378300
anovak-vgSNP**het
98.0636
98.0936
98.0337
24.0083
18378833571818289093668413178
35.9230
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.1701
95.0166
99.4235
24.0070
516727151743029
96.6667
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
95.0000
90.4762
100.0000
24.0000
1921900
gduggal-bwafbSNP**het
99.6957
99.8616
99.5303
23.9839
1871007259418712158830595
6.7384
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
90.6252
83.1422
99.5885
23.9833
72514772633
100.0000
hfeng-pmm1SNP*func_cdshet
99.9015
99.9462
99.8567
23.9755
11155611152160
0.0000
rpoplin-dv42SNPtifunc_cdshet
99.9236
99.9530
99.8942
23.9564
85004849892
22.2222
raldana-dualsentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7499
93.8209
99.8677
23.9437
7444975511
100.0000
ckim-dragenINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
23.9437
5105400
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.7859
91.9518
99.9537
23.9402
4273374432222
100.0000
gduggal-snapplatSNP*HG002complexvarhet
97.4346
97.1046
97.7668
23.9217
45202213478453020103481516
14.6502
egarrison-hhgaSNP*func_cds*
99.9477
99.9725
99.9229
23.9159
18145518145140
0.0000
gduggal-bwaplatINDELD1_5func_cdshomalt
97.2222
94.5946
100.0000
23.9130
7047000
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.1063
94.3753
100.0000
23.8971
6443384645200
jli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.7103
96.0354
99.4447
23.8949
661327366263736
97.2973
hfeng-pmm3INDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
98.0000
96.0784
100.0000
23.8806
4925100