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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
64451-64500 / 86044 show all
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
96.6942
93.6000
100.0000
29.3413
117811800
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
78.9725
65.3768
99.7076
29.3388
32117034111
100.0000
jmaeng-gatkSNPtifunc_cds*
99.5302
99.8912
99.1718
29.3312
1377215137701151
0.8696
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
95.1973
91.2471
99.5050
29.3294
1178113120665
83.3333
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1408
94.9941
99.3867
29.3238
647134164824039
97.5000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
76.3337
62.0112
99.2593
29.3194
1116813411
100.0000
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
86.6360
76.8019
99.3583
29.3091
195058920131311
84.6154
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.8550
94.3417
99.5058
29.2966
760345676513838
100.0000
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.8550
94.3417
99.5058
29.2966
760345676513838
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.8615
94.3541
99.5059
29.2939
760445576523838
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.8615
94.3541
99.5059
29.2939
760445576523838
100.0000
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4782
93.6096
99.5281
29.2918
754451575923636
100.0000
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4782
93.6096
99.5281
29.2918
754451575923636
100.0000
egarrison-hhgaSNPtvfunc_cdshet
99.9248
100.0000
99.8497
29.2851
26570265740
0.0000
hfeng-pmm3SNPtvfunc_cdshet
99.9059
99.9624
99.8496
29.2819
26561265540
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7776
99.5561
100.0000
29.2802
246711246600
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
82.9090
71.0794
99.4624
29.2776
34914237022
100.0000
ckim-dragenINDELI6_15HG002compoundhethetalt
95.5341
91.4607
99.9873
29.2729
7808729784911
100.0000
eyeh-varpipeINDELD6_15HG002compoundhethomalt
1.5501
83.3333
0.7823
29.2688
2042835513544
99.8029
ghariani-varprowlINDELI1_5func_cdshomalt
97.0213
95.7983
98.2759
29.2683
114511421
50.0000
jpowers-varprowlSNPtifunc_cdshet
99.3416
99.3650
99.3183
29.2650
8450548450582
3.4483
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
75.4780
60.8939
99.2481
29.2553
1097013211
100.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.5410
95.2000
100.0000
29.2398
119612100
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
72.9300
58.6592
96.3768
29.2308
1057413354
80.0000
ltrigg-rtg1SNPtiHG002compoundhethomalt
98.7135
97.5656
99.8888
29.2249
7214180718787
87.5000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8206
99.6928
99.9487
29.2204
389412389321
50.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
64.3273
59.5954
69.8756
29.2072
10316991067460370
80.4348
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.6154
86.5925
99.5389
29.1978
1479229151177
100.0000
astatham-gatkSNPtvfunc_cds*
99.8283
99.7483
99.9083
29.1951
436011435940
0.0000
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
35.8169
30.4348
43.5115
29.1892
49112577460
81.0811
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
55.9562
40.2810
91.6031
29.1892
68810202402221
95.4545
jpowers-varprowlSNP*func_cds*
99.3809
99.4931
99.2689
29.1793
18058921805813314
10.5263
ckim-vqsrSNPtifunc_cds*
99.7642
99.7244
99.8040
29.1716
137493813747270
0.0000
egarrison-hhgaINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
29.1667
119011900
ckim-dragenINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
29.1667
119011900
raldana-dualsentieonINDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
29.1667
119011900
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.5761
99.5795
99.5726
29.1625
14216139862
33.3333
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.9021
98.3051
99.5064
29.1608
92816100855
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.9132
85.7987
98.9660
29.1571
6102101064136758
86.5672
jlack-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
99.2378
98.6999
99.7817
29.1570
9111291422
100.0000
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
83.1458
71.4848
99.3528
29.1555
18157241842129
75.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
77.4032
63.1365
100.0000
29.1489
31018133300
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
78.2609
88.7324
70.0000
29.1339
638632727
100.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.7831
99.5671
100.0000
29.1217
460246000
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3331
98.7166
99.9574
29.1176
469261468922
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8991
99.8789
99.9192
29.1154
24753247421
50.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.4697
91.8338
99.4055
29.1133
126401124127077675
98.6842
gduggal-snapfbSNPtv*het
98.4503
99.7960
97.1404
29.1063
590497120759083917393571
3.2829
jlack-gatkSNPtifunc_cds*
99.4443
99.9565
98.9373
29.0994
137816137791481
0.6757
eyeh-varpipeINDELI6_15HG002compoundhethetalt
42.7960
27.4218
97.4089
29.0841
2341619624066463
98.4375