PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64401-64450 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | ti | tech_badpromoters | homalt | 94.9679 | 92.6829 | 97.3684 | 29.6296 | 38 | 3 | 37 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | func_cds | * | 99.9199 | 99.9314 | 99.9085 | 29.6249 | 4368 | 3 | 4367 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 65.4441 | 60.5202 | 71.2401 | 29.6193 | 1047 | 683 | 1080 | 436 | 388 | 88.9908 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | * | 94.7189 | 90.8586 | 98.9217 | 29.6040 | 2127 | 214 | 2110 | 23 | 23 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9869 | 94.4529 | 99.6605 | 29.5910 | 10489 | 616 | 10569 | 36 | 36 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7110 | 86.7096 | 99.6050 | 29.5781 | 1481 | 227 | 1513 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.6440 | 90.0688 | 99.7088 | 29.5734 | 6149 | 678 | 1712 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 45.1124 | 44.6159 | 45.6200 | 29.5676 | 1330 | 1651 | 1880 | 2241 | 2138 | 95.4038 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.4518 | 77.8195 | 99.8053 | 29.5610 | 1035 | 295 | 1025 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7831 | 99.5671 | 100.0000 | 29.5559 | 460 | 2 | 460 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.9417 | 63.8554 | 96.7742 | 29.5455 | 53 | 30 | 60 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 90.2013 | 82.6531 | 99.2669 | 29.5455 | 648 | 136 | 677 | 5 | 5 | 100.0000 | |
| ckim-isaac | SNP | tv | HG002complexvar | hetalt | 93.4708 | 87.7419 | 100.0000 | 29.5337 | 272 | 38 | 272 | 0 | 0 | ||
| ckim-isaac | SNP | * | HG002complexvar | hetalt | 93.4708 | 87.7419 | 100.0000 | 29.5337 | 272 | 38 | 272 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5254 | 93.7213 | 99.5026 | 29.5295 | 7553 | 506 | 7601 | 38 | 37 | 97.3684 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5254 | 93.7213 | 99.5026 | 29.5295 | 7553 | 506 | 7601 | 38 | 37 | 97.3684 | |
| jli-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5238 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5238 | 74 | 0 | 74 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5238 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 94.7339 | 90.5742 | 99.2941 | 29.5191 | 836 | 87 | 844 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 29.5181 | 116 | 9 | 117 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.4621 | 71.8941 | 99.4667 | 29.5113 | 353 | 138 | 373 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8917 | 99.7835 | 100.0000 | 29.5107 | 461 | 1 | 461 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | HG002compoundhet | hetalt | 95.3997 | 91.2147 | 99.9872 | 29.5092 | 7787 | 750 | 7827 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 93.4783 | 87.7551 | 100.0000 | 29.5082 | 43 | 6 | 43 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2234 | 91.3356 | 99.4570 | 29.5056 | 2161 | 205 | 2198 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.6790 | 63.6186 | 99.7178 | 29.4964 | 4564 | 2610 | 4593 | 13 | 13 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5113 | 99.0527 | 99.9742 | 29.4879 | 3869 | 37 | 3868 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.4541 | 88.1148 | 99.4822 | 29.4843 | 1505 | 203 | 1537 | 8 | 8 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.4541 | 88.1148 | 99.4822 | 29.4843 | 1505 | 203 | 1537 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.2324 | 94.6386 | 99.9724 | 29.4827 | 3601 | 204 | 3625 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 40.2391 | 29.5082 | 63.2353 | 29.4815 | 36 | 86 | 301 | 175 | 141 | 80.5714 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.1429 | 56.4246 | 100.0000 | 29.4798 | 101 | 78 | 122 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8465 | 99.9232 | 99.7699 | 29.4425 | 3903 | 3 | 3902 | 9 | 1 | 11.1111 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.8530 | 86.9868 | 99.5675 | 29.4261 | 1123 | 168 | 1151 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.0000 | 92.3077 | 100.0000 | 29.4118 | 12 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 29.4118 | 11 | 1 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 29.4118 | 11 | 1 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 63.6364 | 87.5000 | 50.0000 | 29.4118 | 7 | 1 | 18 | 18 | 18 | 100.0000 | |
| gduggal-snapfb | SNP | tv | func_cds | homalt | 99.9120 | 100.0000 | 99.8243 | 29.4045 | 1704 | 0 | 1704 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 55.0228 | 69.6517 | 45.4722 | 29.4037 | 420 | 183 | 1868 | 2240 | 2137 | 95.4018 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6750 | 99.5671 | 99.7831 | 29.4028 | 460 | 2 | 460 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | tv | func_cds | homalt | 99.8535 | 100.0000 | 99.7074 | 29.3802 | 1704 | 0 | 1704 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.6141 | 91.5968 | 100.0000 | 29.3704 | 4371 | 401 | 4420 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | HG002compoundhet | hetalt | 95.0169 | 90.5822 | 99.9083 | 29.3644 | 7733 | 804 | 7628 | 7 | 6 | 85.7143 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7565 | 99.6416 | 99.8717 | 29.3435 | 3892 | 14 | 3891 | 5 | 1 | 20.0000 | |
| gduggal-snapvard | SNP | * | func_cds | * | 99.3360 | 99.0138 | 99.6603 | 29.3432 | 17971 | 179 | 17895 | 61 | 23 | 37.7049 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 29.3413 | 116 | 9 | 118 | 0 | 0 | ||