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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
64151-64200 / 86044 show all
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
54.0864
41.3442
78.1818
30.8176
20328886246
25.0000
gduggal-bwafbINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
76.5432
62.0000
100.0000
30.8176
21713311000
ckim-dragenSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8338
99.8720
99.7956
30.8168
39015390584
50.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
hfeng-pmm1INDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
30.8140
119011900
hfeng-pmm3INDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
30.8140
119011900
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4888
93.5852
99.5783
30.8129
869559687383737
100.0000
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4888
93.5852
99.5783
30.8129
869559687383737
100.0000
anovak-vgINDELD6_15HG002compoundhethet
52.4874
55.7243
49.6058
30.8102
477379258026211862
71.0416
cchapple-customINDELD6_15HG002compoundhethet
96.2282
94.6262
97.8854
30.8078
810469860213202
94.8357
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
90.4880
83.4521
98.8195
30.8039
11710232212138145128
88.2759
cchapple-customINDELD16_PLUSHG002compoundhethet
95.2281
95.0617
95.3950
30.7967
385202403116113
97.4138
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.0371
92.9707
99.3127
30.7967
111184115688
100.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.5047
99.0504
99.9631
30.7908
271226271211
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8065
92.2605
99.6360
30.7769
129461086131394848
100.0000
hfeng-pmm2SNPtiHG002compoundhethomalt
99.9324
99.9459
99.9189
30.7750
73904739066
100.0000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1646
92.9308
99.6316
30.7725
12791973129824848
100.0000
hfeng-pmm2INDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
80.5755
67.4699
100.0000
30.7692
56276300
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
16.6667
30.7692
0031515
100.0000
ltrigg-rtg1INDEL*func_cdshomalt
99.7783
99.5575
100.0000
30.7692
225122500
ltrigg-rtg1INDELD1_5tech_badpromoters*
97.2973
94.7368
100.0000
30.7692
1811800
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
79.1201
65.5963
99.6683
30.7692
57230060120
0.0000
gduggal-snapfbINDELI6_15func_cdshomalt
75.0000
60.0000
100.0000
30.7692
96900
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.8514
86.7287
99.9044
30.7514
2052314209022
100.0000
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8537
99.7443
99.9634
30.7478
27317273111
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7984
99.9193
99.6778
30.7392
24762247580
0.0000
qzeng-customSNPtifunc_cdshet
99.7296
99.8589
99.6007
30.7386
8492128481341
2.9412
hfeng-pmm2SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
100.0000
99.8600
30.7319
14270142721
50.0000
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.9665
85.1278
100.0000
30.7314
1099192112700
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
90.1203
82.4985
99.2938
30.7241
133428314061010
100.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0845
92.7950
99.6157
30.7178
130211011132205151
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0921
92.8093
99.6158
30.7146
130231009132225151
100.0000
jli-customSNPtiHG002compoundhethomalt
99.9121
99.9324
99.8918
30.7138
73895738988
100.0000
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
91.6583
85.8616
98.2945
30.7003
899414819279161143
88.8199
ckim-gatkSNPtiHG002compoundhethomalt
99.4702
99.0262
99.9181
30.6914
732272732266
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4269
99.0751
99.7811
30.6904
171416182343
75.0000
mlin-fermikitSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
98.3774
99.7197
97.0708
30.6893
1423414254341
95.3488
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6600
95.4525
99.9719
30.6839
106005051068032
66.6667
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.0298
86.3583
98.4987
30.6787
147523315092322
95.6522
gduggal-bwafbINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
61.7761
44.6927
100.0000
30.6667
80995200
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7622
99.5982
99.9267
30.6657
272711272722
100.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
82.8264
70.6869
100.0000
30.6648
88536797000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7101
99.4220
100.0000
30.6569
172010171000
ltrigg-rtg1INDELD6_15HG002compoundhet*
96.2411
93.4780
99.1726
30.6557
844258983907063
90.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.8472
99.7712
99.9233
30.6546
13083130211
100.0000
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.7653
92.1626
99.6610
30.6426
439837444101515
100.0000
jmaeng-gatkSNPtiHG002compoundhethomalt
99.4701
99.0127
99.9317
30.6381
732173732155
100.0000
astatham-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.3126
89.6450
99.4931
30.6266
212124521591111
100.0000
anovak-vgINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
47.4248
37.3206
65.0316
30.6257
156262411221186
84.1629