PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
64051-64100 / 86044 show all | |||||||||||||||
ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4572 | 94.0150 | 99.0295 | 31.3640 | 7006 | 446 | 7041 | 69 | 48 | 69.5652 | |
gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.2690 | 95.1945 | 99.4359 | 31.3606 | 1248 | 63 | 1234 | 7 | 4 | 57.1429 | |
eyeh-varpipe | INDEL | D1_5 | func_cds | * | 98.4442 | 98.7421 | 98.1481 | 31.3559 | 157 | 2 | 159 | 3 | 2 | 66.6667 | |
jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.8793 | 95.8466 | 100.0000 | 31.3501 | 300 | 13 | 300 | 0 | 0 | ||
jmaeng-gatk | SNP | tv | * | het | 99.5410 | 99.5807 | 99.5013 | 31.3482 | 589215 | 2481 | 589142 | 2953 | 52 | 1.7609 | |
jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2315 | 96.7180 | 99.7931 | 31.3447 | 1444 | 49 | 1447 | 3 | 3 | 100.0000 | |
jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 89.0334 | 80.6002 | 99.4376 | 31.3443 | 1907 | 459 | 1945 | 11 | 10 | 90.9091 | |
gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6609 | 95.5759 | 99.8390 | 31.3433 | 1253 | 58 | 1240 | 2 | 1 | 50.0000 | |
jlack-gatk | SNP | tv | * | het | 99.3606 | 99.9332 | 98.7945 | 31.3268 | 591301 | 395 | 591230 | 7214 | 153 | 2.1209 | |
cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1404 | 98.4353 | 99.8557 | 31.3181 | 692 | 11 | 1384 | 2 | 1 | 50.0000 | |
astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.7749 | 88.6135 | 99.5748 | 31.3084 | 1144 | 147 | 1171 | 5 | 5 | 100.0000 | |
ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4732 | 97.1869 | 99.7941 | 31.3060 | 1451 | 42 | 1454 | 3 | 3 | 100.0000 | |
ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4732 | 97.1869 | 99.7941 | 31.3060 | 1451 | 42 | 1454 | 3 | 3 | 100.0000 | |
astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.4680 | 77.9553 | 99.6251 | 31.2943 | 976 | 276 | 1063 | 4 | 4 | 100.0000 | |
qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.5560 | 97.8984 | 93.3230 | 31.2914 | 559 | 12 | 2418 | 173 | 165 | 95.3757 | |
gduggal-bwaplat | INDEL | I1_5 | func_cds | homalt | 96.9697 | 94.1176 | 100.0000 | 31.2883 | 112 | 7 | 112 | 0 | 0 | ||
qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 88.1620 | 79.3519 | 99.1726 | 31.2754 | 10922 | 2842 | 2517 | 21 | 18 | 85.7143 | |
mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0092 | 96.5121 | 99.5535 | 31.2615 | 4455 | 161 | 4459 | 20 | 0 | 0.0000 | |
dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0410 | 89.1557 | 99.4928 | 31.2609 | 1151 | 140 | 1177 | 6 | 5 | 83.3333 | |
jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.6744 | 100.0000 | 95.4545 | 31.2500 | 21 | 0 | 21 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6089 | 93.9727 | 99.3973 | 31.2378 | 8731 | 560 | 8741 | 53 | 52 | 98.1132 | |
rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6089 | 93.9727 | 99.3973 | 31.2378 | 8731 | 560 | 8741 | 53 | 52 | 98.1132 | |
ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 91.7362 | 85.8358 | 98.5078 | 31.2346 | 7975 | 1316 | 8252 | 125 | 116 | 92.8000 | |
ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 91.7362 | 85.8358 | 98.5078 | 31.2346 | 7975 | 1316 | 8252 | 125 | 116 | 92.8000 | |
jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.0121 | 47.2505 | 99.2032 | 31.2329 | 232 | 259 | 249 | 2 | 1 | 50.0000 | |
raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.7068 | 93.6325 | 99.9899 | 31.2313 | 9808 | 667 | 9890 | 1 | 1 | 100.0000 | |
ndellapenna-hhga | SNP | ti | HG002compoundhet | homalt | 98.8916 | 99.5266 | 98.2646 | 31.2248 | 7359 | 35 | 7361 | 130 | 119 | 91.5385 | |
ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7486 | 99.5235 | 99.9748 | 31.2218 | 3968 | 19 | 3962 | 1 | 0 | 0.0000 | |
dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.9791 | 94.1744 | 99.9560 | 31.2217 | 4494 | 278 | 4547 | 2 | 2 | 100.0000 | |
ckim-vqsr | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
jmaeng-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
ckim-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0843 | 96.2406 | 100.0000 | 31.1996 | 1280 | 50 | 1279 | 0 | 0 | ||
ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0970 | 98.4127 | 99.7908 | 31.1983 | 1922 | 31 | 1908 | 4 | 3 | 75.0000 | |
qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.5072 | 99.1591 | 99.8579 | 31.1980 | 1415 | 12 | 1405 | 2 | 2 | 100.0000 | |
jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.2360 | 95.2999 | 99.2524 | 31.1832 | 1541 | 76 | 1726 | 13 | 13 | 100.0000 | |
gduggal-snapfb | INDEL | I1_5 | func_cds | homalt | 99.1525 | 98.3193 | 100.0000 | 31.1765 | 117 | 2 | 117 | 0 | 0 | ||
asubramanian-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5450 | 87.1936 | 98.5962 | 31.1755 | 2063 | 303 | 2107 | 30 | 29 | 96.6667 | |
hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4888 | 99.0901 | 99.8907 | 31.1720 | 4574 | 42 | 4570 | 5 | 0 | 0.0000 | |
jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.2768 | 89.5307 | 99.5544 | 31.1699 | 12323 | 1441 | 12511 | 56 | 50 | 89.2857 | |
jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 94.5039 | 89.7494 | 99.7904 | 31.1688 | 394 | 45 | 476 | 1 | 1 | 100.0000 | |
ltrigg-rtg1 | INDEL | D1_5 | func_cds | * | 99.0556 | 98.7421 | 99.3711 | 31.1688 | 157 | 2 | 158 | 1 | 0 | 0.0000 | |
ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.7712 | 99.9233 | 31.1675 | 1308 | 3 | 1302 | 1 | 1 | 100.0000 | |
ltrigg-rtg1 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 31.1475 | 42 | 1 | 42 | 0 | 0 | ||
jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7805 | 99.6348 | 99.9267 | 31.1475 | 2728 | 10 | 2728 | 2 | 2 | 100.0000 | |
gduggal-snapplat | INDEL | D1_5 | func_cds | homalt | 91.9708 | 85.1351 | 100.0000 | 31.1475 | 63 | 11 | 84 | 0 | 0 | ||
ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0140 | 98.1239 | 99.9205 | 31.1473 | 5021 | 96 | 5025 | 4 | 4 | 100.0000 | |
ckim-vqsr | SNP | tv | * | het | 99.3645 | 98.9162 | 99.8170 | 31.1430 | 585283 | 6413 | 585211 | 1073 | 39 | 3.6347 | |
gduggal-bwaplat | SNP | ti | func_cds | * | 99.4984 | 99.2747 | 99.7231 | 31.1374 | 13687 | 100 | 13687 | 38 | 4 | 10.5263 | |
ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.5547 | 73.4026 | 99.7027 | 31.1263 | 919 | 333 | 1006 | 3 | 3 | 100.0000 |