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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
64001-64050 / 86044 show all
asubramanian-gatkSNPtifunc_cdshet
99.6530
99.6472
99.6589
31.5760
8474308472291
3.4483
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.3105
97.4328
99.2041
31.5728
2391063024805199188
94.4724
cchapple-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9456
99.8912
100.0000
31.5724
27553274600
ciseli-customINDELD6_15HG002compoundhethomalt
0.9875
87.5000
0.4965
31.5704
2132346094348
94.3372
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9211
94.3694
99.6146
31.5700
12989775131825150
98.0392
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.2212
85.5653
100.0000
31.5699
1559263159100
gduggal-bwavardSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.7824
97.6925
99.8969
31.5687
389592387444
100.0000
gduggal-snapfbINDEL*func_cdshomalt
95.3704
91.1504
100.0000
31.5615
2062020600
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
87.6621
78.3888
99.4236
31.5582
1012279103565
83.3333
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.6454
95.9224
99.4314
31.5401
682229068203939
100.0000
anovak-vgINDELI6_15HG002compoundhet*
31.2822
22.7666
49.9744
31.5356
19986778195419561488
76.0736
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.5589
95.6625
99.5320
31.5275
888840389324240
95.2381
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.5589
95.6625
99.5320
31.5275
888840389324240
95.2381
ckim-isaacSNP*tech_badpromoters*
93.2432
87.8981
99.2806
31.5271
1381913810
0.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.5910
99.3338
99.8496
31.5262
7306497302113
27.2727
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3707
95.3390
99.4908
31.5202
9004497755
100.0000
ckim-dragenINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.4526
86.3337
99.5050
31.4964
1573249160888
100.0000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
97.5847
95.9538
99.2721
31.4921
16607017731312
92.3077
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1659
93.1102
99.4290
31.4906
662249066173838
100.0000
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.5598
93.3484
100.0000
31.4834
8673618871600
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5598
93.3484
100.0000
31.4834
8673618871600
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.6166
92.7056
98.7164
31.4832
12760100413612177161
90.9605
astatham-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
31.4815
7407400
bgallagher-sentieonINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
31.4815
7407400
dgrover-gatkINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
31.4815
7407400
rpoplin-dv42INDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
31.4815
7407400
gduggal-snapfbINDELI6_15*het
80.8118
75.9494
86.3394
31.4688
762024131215419231866
97.0359
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
59.9212
54.8636
66.0058
31.4666
51894269519426752487
92.9720
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
81.5245
69.8462
97.8923
31.4607
45419641898
88.8889
bgallagher-sentieonSNPtvfunc_cdshet
99.7184
100.0000
99.4384
31.4601
265702656150
0.0000
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
81.6561
69.2510
99.4755
31.4587
2635117026551414
100.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3694
95.3108
99.5190
31.4561
518325551722525
100.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.7443
92.7854
98.8981
31.4540
203215825132826
92.8571
gduggal-snapplatINDEL*func_cdshomalt
81.6523
71.6814
94.8454
31.4488
16264184101
10.0000
cchapple-customINDELD6_15HG002compoundhet*
95.2970
93.9320
96.7022
31.4437
84835489882337326
96.7359
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6541
99.6750
99.6331
31.4341
4601154616172
11.7647
jpowers-varprowlINDEL*func_cdshomalt
94.1725
89.3805
99.5074
31.4189
2022420211
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
80.9710
68.2936
99.4281
31.4166
7584352176494444
100.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.6844
90.6909
99.0458
31.4136
154915915571515
100.0000
gduggal-bwaplatSNPtv**
98.5599
97.4574
99.6876
31.4101
945035246559452542962440
14.8548
asubramanian-gatkINDELI1_5func_cdshomalt
99.5781
99.1597
100.0000
31.3953
118111800
qzeng-customINDELD6_15HG002compoundhet*
81.7565
82.9255
80.6200
31.3934
7489154285822063963
46.6796
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.1020
85.3602
100.0000
31.3904
1102189113000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
77.1881
96.8041
64.1824
31.3791
100263311624290649022
99.5366
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
71.5901
79.0706
65.4026
31.3787
2161572503626642476
92.9429
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8059
94.1587
99.6062
31.3760
12960804131545251
98.0769
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
82.7315
70.7276
99.6429
31.3725
83634683733
100.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.2920
98.7455
99.8446
31.3666
385749385661
16.6667
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.8870
99.7743
100.0000
31.3665
442144200
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.8193
73.8019
99.7033
31.3646
924328100833
100.0000