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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
63951-64000 / 86044 show all
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9635
99.9270
31.7808
27371273721
50.0000
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
90.4363
84.5070
97.2603
31.7757
1202214244
100.0000
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
84.6788
73.4824
99.9005
31.7719
920332100411
100.0000
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
70.2899
54.1899
100.0000
31.7647
978211600
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
76.1194
61.4458
100.0000
31.7647
51325800
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.3956
93.1863
99.8338
31.7550
2366173240344
100.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.3956
93.1863
99.8338
31.7550
2366173240344
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50*
99.6524
99.3882
99.9179
31.7465
731045730661
16.6667
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.2210
96.5042
100.0000
31.7460
9113398900
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
58.5125
78.4461
46.6568
31.7444
31386314359357
99.4429
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.7194
78.3546
99.6265
31.7400
981271106744
100.0000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
61.3722
45.0807
96.1020
31.7355
326739803353136135
99.2647
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
71.6109
63.4771
82.1356
31.7350
4712712023440436
99.0909
ghariani-varprowlSNPtifunc_cdshet
99.5080
99.8942
99.1249
31.7349
849598495752
2.6667
qzeng-customINDEL*func_cdshomalt
97.2362
99.5575
95.0207
31.7280
2251229122
16.6667
gduggal-snapvardINDELI6_15HG002compoundhet*
20.6071
16.5147
27.3957
31.7261
14497325147839173324
84.8609
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.7189
93.6864
99.9542
31.7179
128958691308365
83.3333
gduggal-snapplatSNP*func_cds*
99.4703
99.3223
99.6187
31.7106
1802712318027695
7.2464
gduggal-snapplatSNPtv**
98.6169
98.1754
99.0623
31.7051
9520051769395236890151026
11.3810
ckim-vqsrSNP*func_cds*
99.7574
99.7080
99.8069
31.6969
180975318094350
0.0000
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.6607
91.0166
98.6088
31.6968
607960059548472
85.7143
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
52.4343
64.2857
44.2724
31.6918
477265200225202292
90.9524
astatham-gatkSNPtvfunc_cdshet
99.7173
99.5860
99.8490
31.6916
264611264540
0.0000
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.3623
92.9799
100.0000
31.6887
4437335448600
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
77.0538
84.4720
70.8333
31.6726
136251365635
62.5000
ciseli-customINDELD16_PLUSHG002compoundhethomalt
1.0601
75.0000
0.5338
31.6717
62611181065
95.2594
gduggal-snapvardINDELI6_15HG002compoundhethet
36.3374
54.3269
27.2981
31.6711
11395147039153322
84.8531
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.7481
97.7227
99.7952
31.6698
145934146233
100.0000
ckim-isaacINDELI6_15HG002compoundhet*
78.6319
69.8154
89.9971
31.6672
612726496127681634
93.0984
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
50.5670
63.6364
41.9512
31.6667
14886119118
99.1597
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
96.4583
96.5753
96.3415
31.6667
564207933
100.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.3592
99.0869
99.6329
31.6608
2713252714101
10.0000
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
76.3374
62.0495
99.1738
31.6467
2961181130012525
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4901
93.6175
99.5447
31.6449
869859387454040
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4901
93.6175
99.5447
31.6449
869859387454040
100.0000
jlack-gatkSNP*func_cds*
99.3020
99.9614
98.6513
31.6355
181437181402481
0.4032
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
93.0849
87.0643
100.0000
31.6290
1124167115000
gduggal-snapvardSNPtv*het
98.6977
99.0250
98.3726
31.6253
585935576958336696511423
14.7446
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8135
96.1864
99.4965
31.6116
9083698855
100.0000
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
83.9311
72.3642
99.8993
31.6116
90634699211
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8135
96.1864
99.4965
31.6116
9083698855
100.0000
rpoplin-dv42INDELI1_5func_cdshomalt
100.0000
100.0000
100.0000
31.6092
119011900
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6428
93.5038
100.0000
31.5949
4462310451200
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.0534
98.1246
100.0000
31.5937
146528146800
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.6003
99.6750
99.5257
31.5929
4601154616222
9.0909
ckim-gatkSNP*func_cds*
99.6618
99.8678
99.4567
31.5863
181262418123991
1.0101
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
58.0645
50.0000
69.2308
31.5789
44944
100.0000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
67.7725
56.5217
84.6154
31.5789
13101121
50.0000
ckim-isaacINDELI6_15func_cdshomalt
92.8571
86.6667
100.0000
31.5789
1321300
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
31.5789
1301300