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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
63851-63900 / 86044 show all | |||||||||||||||
jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5421 | 97.3208 | 99.7944 | 32.2970 | 1453 | 40 | 1456 | 3 | 3 | 100.0000 | |
anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.3224 | 97.0558 | 97.5904 | 32.2861 | 3791 | 115 | 3807 | 94 | 61 | 64.8936 | |
astatham-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.8248 | 88.7486 | 99.5169 | 32.2699 | 1617 | 205 | 1648 | 8 | 8 | 100.0000 | |
ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.5907 | 83.7697 | 98.6209 | 32.2653 | 6751 | 1308 | 7151 | 100 | 87 | 87.0000 | |
ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.5907 | 83.7697 | 98.6209 | 32.2653 | 6751 | 1308 | 7151 | 100 | 87 | 87.0000 | |
egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 32.2581 | 21 | 0 | 21 | 0 | 0 | ||
hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 32.2581 | 21 | 0 | 21 | 0 | 0 | ||
ciseli-custom | INDEL | I6_15 | func_cds | * | 53.1250 | 39.5349 | 80.9524 | 32.2581 | 17 | 26 | 17 | 4 | 4 | 100.0000 | |
ckim-dragen | SNP | ti | func_cds | het | 99.3804 | 99.9647 | 98.8029 | 32.2466 | 8501 | 3 | 8501 | 103 | 1 | 0.9709 | |
hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0193 | 98.0576 | 100.0000 | 32.2402 | 1464 | 29 | 1467 | 0 | 0 | ||
mlin-fermikit | SNP | * | * | hetalt | 97.1091 | 94.4891 | 99.8786 | 32.2368 | 823 | 48 | 823 | 1 | 1 | 100.0000 | |
mlin-fermikit | SNP | tv | * | hetalt | 97.1091 | 94.4891 | 99.8786 | 32.2368 | 823 | 48 | 823 | 1 | 1 | 100.0000 | |
rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.8927 | 82.1104 | 99.3046 | 32.2337 | 1354 | 295 | 1428 | 10 | 10 | 100.0000 | |
dgrover-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9517 | 89.0231 | 99.4582 | 32.2317 | 1622 | 200 | 1652 | 9 | 8 | 88.8889 | |
anovak-vg | INDEL | D16_PLUS | HG002compoundhet | * | 28.7549 | 21.7001 | 42.6065 | 32.2197 | 508 | 1833 | 510 | 687 | 477 | 69.4323 | |
jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.7194 | 61.1022 | 99.5294 | 32.2169 | 765 | 487 | 846 | 4 | 3 | 75.0000 | |
ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.2925 | 97.1972 | 99.4127 | 32.2154 | 6693 | 193 | 6771 | 40 | 40 | 100.0000 | |
gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 81.8508 | 71.2279 | 96.1979 | 32.2123 | 2332 | 942 | 6806 | 269 | 258 | 95.9108 | |
hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.1661 | 96.3983 | 100.0000 | 32.2115 | 910 | 34 | 987 | 0 | 0 | ||
ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8356 | 99.8174 | 99.8539 | 32.2109 | 2733 | 5 | 2734 | 4 | 3 | 75.0000 | |
gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 46.9083 | 32.3849 | 85.0498 | 32.2072 | 387 | 808 | 256 | 45 | 39 | 86.6667 | |
gduggal-bwavard | SNP | ti | func_cds | het | 99.2690 | 99.0710 | 99.4677 | 32.1944 | 8425 | 79 | 8409 | 45 | 15 | 33.3333 | |
hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7001 | 99.4290 | 99.9726 | 32.1925 | 7313 | 42 | 7309 | 2 | 1 | 50.0000 | |
eyeh-varpipe | SNP | tv | func_cds | * | 94.7737 | 99.9771 | 90.0850 | 32.1750 | 4370 | 1 | 4343 | 478 | 0 | 0.0000 | |
jpowers-varprowl | SNP | * | func_cds | het | 99.1057 | 99.2922 | 98.9199 | 32.1729 | 11082 | 79 | 11082 | 121 | 2 | 1.6529 | |
eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 63.5703 | 52.8321 | 79.7871 | 32.1688 | 3134 | 2798 | 11092 | 2810 | 2788 | 99.2171 | |
eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 48.5484 | 60.8696 | 40.3756 | 32.1656 | 14 | 9 | 86 | 127 | 125 | 98.4252 | |
hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.2596 | 74.3610 | 99.9015 | 32.1524 | 931 | 321 | 1014 | 1 | 1 | 100.0000 | |
gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.5630 | 82.2103 | 95.9796 | 32.1478 | 5661 | 1225 | 1886 | 79 | 51 | 64.5570 | |
gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 35.5751 | 30.6061 | 42.4704 | 32.1470 | 101 | 229 | 251 | 340 | 290 | 85.2941 | |
rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 32.1349 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 89.7782 | 82.5984 | 98.3250 | 32.1288 | 4870 | 1026 | 4931 | 84 | 71 | 84.5238 | |
ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 89.7782 | 82.5984 | 98.3250 | 32.1288 | 4870 | 1026 | 4931 | 84 | 71 | 84.5238 | |
eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.8005 | 87.2340 | 26.6272 | 32.1285 | 41 | 6 | 45 | 124 | 115 | 92.7419 | |
eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0215 | 98.2585 | 99.7963 | 32.1198 | 1467 | 26 | 1470 | 3 | 3 | 100.0000 | |
jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.6208 | 90.1948 | 99.5035 | 32.1162 | 8380 | 911 | 8417 | 42 | 38 | 90.4762 | |
jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.6208 | 90.1948 | 99.5035 | 32.1162 | 8380 | 911 | 8417 | 42 | 38 | 90.4762 | |
raldana-dualsentieon | INDEL | D6_15 | * | hetalt | 96.4666 | 93.1857 | 99.9870 | 32.1144 | 7617 | 557 | 7666 | 1 | 1 | 100.0000 | |
asubramanian-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 32.1101 | 74 | 0 | 74 | 0 | 0 | ||
hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8870 | 99.7743 | 100.0000 | 32.1045 | 442 | 1 | 442 | 0 | 0 | ||
gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.2286 | 59.3301 | 57.1672 | 32.0973 | 248 | 170 | 335 | 251 | 223 | 88.8446 | |
qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.0419 | 95.4134 | 96.6787 | 32.0948 | 4535 | 218 | 4541 | 156 | 154 | 98.7179 | |
egarrison-hhga | INDEL | I1_5 | func_cds | * | 99.4475 | 100.0000 | 98.9011 | 32.0896 | 180 | 0 | 180 | 2 | 0 | 0.0000 | |
ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.3741 | 93.2180 | 99.7514 | 32.0838 | 1993 | 145 | 2006 | 5 | 0 | 0.0000 | |
gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | * | 88.7012 | 84.9518 | 92.7969 | 32.0774 | 7672 | 1359 | 8799 | 683 | 663 | 97.0717 | |
eyeh-varpipe | INDEL | I6_15 | func_cds | * | 88.6076 | 81.3953 | 97.2222 | 32.0755 | 35 | 8 | 35 | 1 | 1 | 100.0000 | |
mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.1353 | 37.1134 | 100.0000 | 32.0755 | 36 | 61 | 36 | 0 | 0 | ||
ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0989 | 95.1988 | 99.0764 | 32.0722 | 17310 | 873 | 17379 | 162 | 93 | 57.4074 |