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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
63801-63850 / 86044 show all
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
52.7219
35.8609
99.5087
32.6223
18353282182398
88.8889
ckim-isaacSNPtiHG002compoundhet*
88.7627
82.1776
96.4952
32.6037
14363311514647532421
79.1353
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
76.5171
62.3875
98.9208
32.6004
4296259040334440
90.9091
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.3110
86.1669
99.3986
32.5999
1115179115777
100.0000
raldana-dualsentieonINDELI1_5func_cds*
99.1720
99.4444
98.9011
32.5926
179118020
0.0000
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.5221
95.5960
99.5274
32.5866
651230065293131
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1914
92.7644
99.8814
32.5739
1500117168522
100.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1709
93.1280
99.4195
32.5705
668149366793939
100.0000
ghariani-varprowlINDEL*func_cdshomalt
93.7355
89.3805
98.5366
32.5658
2022420231
33.3333
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
45.8495
29.7945
99.4253
32.5581
17441017311
100.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50*
97.5405
96.0212
99.1085
32.5488
10305427103399345
48.3871
ckim-dragenINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.2959
95.2806
99.3983
32.5487
7473782655
100.0000
mlin-fermikitSNP*lowcmp_SimpleRepeat_triTR_11to50*
98.1429
97.6886
98.6014
32.5284
7185170719110276
74.5098
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
39.0307
30.0166
55.7823
32.5275
1814221230975826
84.7179
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.2126
99.5485
98.8789
32.5265
441244154
80.0000
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
41.6309
53.2787
34.1623
32.5088
260228261503475
94.4334
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.0603
94.6723
99.5719
32.5070
879649588383837
97.3684
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.0603
94.6723
99.5719
32.5070
879649588383837
97.3684
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.8619
99.7492
99.9748
32.5060
397710396910
0.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
78.8211
67.4076
94.8874
32.5021
260812617628411399
97.0803
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.6754
93.6402
99.9140
32.5015
111976116211
100.0000
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.9002
94.3962
99.5408
32.4909
988858799714646
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
93.4570
88.8571
98.5591
32.4903
3113934255
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
76.6168
62.5327
98.8894
32.4892
4306258040074540
88.8889
qzeng-customINDELD16_PLUSHG002compoundhethet
84.4943
95.5556
75.7282
32.4836
387182106675234
34.6667
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
44.3676
44.4859
44.2500
32.4739
10731339194724532342
95.4749
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9231
96.3983
99.4970
32.4728
9103498955
100.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
96.4262
94.1386
98.8277
32.4619
9797610977911687
75.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_triTR_11to50*
99.6319
99.3746
99.8906
32.4559
730946730581
12.5000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.6517
95.9297
99.4366
32.4551
688229268833939
100.0000
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.5501
90.3525
99.1566
32.4379
146115616461414
100.0000
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
70.1135
58.5834
87.2943
32.4261
335823741978728802850
98.9583
hfeng-pmm2INDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
72.5979
56.9832
100.0000
32.4176
1027712300
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_11to50het
99.5648
99.1334
100.0000
32.4169
457640457200
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8057
91.9684
99.9771
32.4064
1290511271309833
100.0000
ckim-isaacINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.6375
87.4780
98.4438
32.3935
5959853632610089
89.0000
gduggal-bwavardSNPtiHG002compoundhethomalt
90.8566
83.4190
99.7503
32.3766
6168122651941312
92.3077
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.1661
96.3983
100.0000
32.3751
9103498800
hfeng-pmm2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
32.3664
443044300
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.0896
98.3925
99.7967
32.3556
146924147333
100.0000
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
54.2480
71.5164
43.6969
32.3548
349139190324522341
95.4731
mlin-fermikitSNPti*hetalt
97.1781
94.6735
99.8188
32.3529
5513155111
100.0000
ltrigg-rtg1INDELI6_15func_cdshet
100.0000
100.0000
100.0000
32.3529
2402300
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
92.4122
85.8946
100.0000
32.3455
1565257159800
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
93.8172
88.6758
99.5914
32.3428
1942248195088
100.0000
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.2807
95.0784
99.5875
32.3304
649133665182727
100.0000
anovak-vgSNPtifunc_cdshet
98.3229
97.6129
99.0434
32.3272
830120382838049
61.2500
jli-customINDELD16_PLUSHG002compoundhet*
96.5889
95.5575
97.6430
32.3191
223710422375453
98.1481
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.8267
90.2557
99.8855
32.3046
4307465436054
80.0000
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
26.8403
19.6198
42.4704
32.3024
2581057251340290
85.2941