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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
63401-63450 / 86044 show all
raldana-dualsentieonSNPtiHG002compoundhet*
98.2432
96.6243
99.9172
34.4311
16888590168891410
71.4286
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.2835
94.0000
98.6807
34.4291
3292137455
100.0000
mlin-fermikitSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
98.3611
99.6713
97.0850
34.4289
2729927318276
92.6829
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.6292
99.7696
99.4893
34.4273
389793896203
15.0000
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.0207
95.3171
98.7864
34.4210
649331965128077
96.2500
rpoplin-dv42INDELD16_PLUS*hetalt
90.5247
83.1350
99.3563
34.4206
160732616981111
100.0000
gduggal-snapvardINDELI1_5*homalt
92.2555
85.9022
99.6235
34.4127
51909851951074193178
92.2280
astatham-gatkINDELI1_5func_cds*
99.4505
100.0000
98.9071
34.4086
180018120
0.0000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
89.2141
84.4066
94.6024
34.3983
500792511480655637
97.2519
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
59.7902
69.7674
52.3096
34.3980
420182419382382
100.0000
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.1639
94.5607
99.9146
34.3978
113065117011
100.0000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.4574
99.5649
99.3502
34.3868
2746122599177
41.1765
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.4451
98.8964
100.0000
34.3864
394344394600
gduggal-bwaplatINDEL*func_cdshomalt
95.3917
91.5929
99.5192
34.3849
2071920711
100.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
60.5363
43.5780
99.1018
34.3811
38049233132
66.6667
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9852
99.9852
99.9852
34.3808
67441674411
100.0000
raldana-dualsentieonINDELD16_PLUSHG002compoundhet*
94.0691
92.4818
95.7118
34.3777
216517621659796
98.9691
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
99.9749
100.0000
34.3760
39861398600
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
34.3750
2102100
ckim-isaacINDELI6_15func_cdshet
93.3333
87.5000
100.0000
34.3750
2132100
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.9248
99.8496
100.0000
34.3750
13282132300
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.2361
89.5703
99.4147
34.3662
243928425481514
93.3333
ndellapenna-hhgaSNPtiHG002compoundhet*
98.5659
98.1119
99.0241
34.3630
1714833017148169140
82.8402
hfeng-pmm1INDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
88.8889
91.9255
86.0465
34.3511
148131482424
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
57.3175
40.2014
99.8145
34.3484
51977253811
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.8619
99.7241
100.0000
34.3461
397611397600
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
97.3655
95.4268
99.3846
34.3434
3131532322
100.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8950
94.3201
99.6144
34.3188
13235797134335250
96.1538
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.0137
96.8220
99.2350
34.3144
9143090877
100.0000
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
90.0602
82.8959
98.5801
34.3105
9792029721413
92.8571
eyeh-varpipeINDELD1_5func_cdshet
98.3051
100.0000
96.6667
34.3066
8508732
66.6667
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
78.3824
64.7764
99.2239
34.3044
81144189574
57.1429
gduggal-bwafbSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7989
99.7078
99.8902
34.3036
27308272831
33.3333
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
90.5141
83.1176
99.3556
34.2956
160532616961111
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
90.5141
83.1176
99.3556
34.2956
160532616961111
100.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.8493
99.7241
99.9749
34.2862
397611397611
100.0000
ltrigg-rtg2INDELI6_15func_cdshet
100.0000
100.0000
100.0000
34.2857
2402300
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
95.4545
100.0000
91.3043
34.2857
2102121
50.0000
gduggal-bwavardSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.5483
97.3169
99.8112
34.2765
268474264353
60.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.5950
99.6678
97.5451
34.2663
5100175086128121
94.5312
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
55.7305
44.0570
75.8202
34.2652
173121981872597591
98.9950
jli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4777
99.0751
99.8835
34.2649
171416171522
100.0000
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
93.1937
87.3160
99.9198
34.2646
1246181124610
0.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.8997
100.0000
34.2631
39834398300
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.9970
93.0118
99.1803
34.2571
150411316941414
100.0000
ndellapenna-hhgaINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
98.2323
97.7636
98.7055
34.2553
306730544
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.4171
52.9438
60.3781
34.2544
966785921031567695257
77.6629
gduggal-bwaplatSNP*func_cds*
99.4779
99.2121
99.7452
34.2475
1800714318007464
8.6957
asubramanian-gatkINDELC1_5HG002compoundhethomalt
0.0000
0.0000
34.2466
000480
0.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
42.6230
100.0000
27.0833
34.2466
130133531
88.5714