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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
63351-63400 / 86044 show all
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
93.3540
87.6993
99.7881
34.6260
3855447111
100.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
93.3540
87.6993
99.7881
34.6260
3855447111
100.0000
egarrison-hhgaINDELI6_15HG002compoundhet*
93.4351
91.3742
95.5910
34.6214
80197578022370313
84.5946
ckim-vqsrSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.6556
99.3135
100.0000
34.6057
13029130200
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
83.8710
72.2706
99.9075
34.6038
1079414108011
100.0000
gduggal-snapvardINDELI1_5func_cds*
92.6851
92.7778
92.5926
34.6021
167131751411
78.5714
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9357
90.3933
99.9588
34.5998
2390254242611
100.0000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.6334
99.4522
99.8153
34.5977
272315270254
80.0000
hfeng-pmm3SNPtiHG002compoundhet*
98.2879
96.7330
99.8937
34.5867
1690757116909188
44.4444
jlack-gatkSNP*HG002compoundhethomalt
99.8516
99.8516
99.8515
34.5857
1076616107611615
93.7500
cchapple-customSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6976
99.7579
99.6374
34.5809
24726247393
33.3333
egarrison-hhgaSNPtiHG002compoundhet*
99.0004
98.5925
99.4116
34.5800
172322461723310275
73.5294
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
78.4796
67.4314
93.8575
34.5759
299814488022525510
97.1429
astatham-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7323
99.4661
100.0000
34.5710
13047130400
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.3228
99.3228
99.3228
34.5643
440344033
100.0000
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
78.4742
68.8666
91.1972
34.5622
4802175185047
94.0000
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
77.2448
63.4300
98.7526
34.5578
50329047564
66.6667
asubramanian-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.8400
99.6805
100.0000
34.5560
312133900
ckim-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7706
99.5423
100.0000
34.5537
13056130500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9237
99.8474
100.0000
34.5500
13092130900
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
83.0586
77.6471
89.2809
34.5471
6601906587979
100.0000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
73.4894
61.2085
91.9355
34.5468
10136421653145143
98.6207
ckim-isaacSNPtitech_badpromoters*
91.7197
84.7059
100.0000
34.5455
72137200
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
76.0659
65.5275
90.6435
34.5437
241612712451253251
99.2095
eyeh-varpipeSNPtvfunc_cdshet
91.6856
99.9624
84.6746
34.5435
2656126414780
0.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
34.5327
13101131000
jmaeng-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
91.6464
84.7380
99.7812
34.5272
3726745611
100.0000
raldana-dualsentieonSNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
34.5048
205220500
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.7692
97.9625
99.5893
34.5018
24040500240059966
66.6667
gduggal-bwavardSNP*func_cdshet
99.2091
99.0055
99.4135
34.5015
11050111110186523
35.3846
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
71.4799
62.8596
82.8402
34.4961
7434391402929
100.0000
eyeh-varpipeINDELI6_15*homalt
77.6886
84.0359
72.2329
34.4939
5243996527320272012
99.2600
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
87.0813
77.1186
100.0000
34.4884
72821679400
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6962
93.6431
99.9550
34.4875
131408921333365
83.3333
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
92.8504
88.1608
98.0670
34.4871
355247715223030
100.0000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
44.3448
92.6829
29.1447
34.4863
4563655213421201
89.4933
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.5591
99.1221
100.0000
34.4828
395235395200
rpoplin-dv42INDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
89.7959
81.9876
99.2481
34.4828
1322913211
100.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
86.1756
76.2974
98.9919
34.4782
98530649155
100.0000
asubramanian-gatkSNP*func_cdshet
99.5968
99.6147
99.5789
34.4684
111184311115471
2.1277
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
98.8728
98.0831
99.6753
34.4681
307630711
100.0000
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50het
97.1980
95.1981
99.2838
34.4662
10884549109517911
13.9241
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7748
100.0000
99.5506
34.4624
443044322
100.0000
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.5495
99.7743
99.3258
34.4624
442144233
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7896
99.8368
99.7424
34.4616
7343127358198
42.1053
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
72.8203
57.4281
99.4845
34.4595
71953319311
100.0000
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7706
99.5423
100.0000
34.4550
13056130500
gduggal-bwafbINDELI16_PLUS*homalt
86.5142
81.1659
92.6170
34.4514
12672941267101100
99.0099
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
35.3846
71.4286
23.5174
34.4504
11546115374359
95.9893
eyeh-varpipeINDELI1_5func_cdshet
97.4503
98.3051
96.6102
34.4444
5815721
50.0000