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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
63251-63300 / 86044 show all
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6795
99.3610
100.0000
35.0731
311231100
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9258
99.8517
100.0000
35.0718
673510673500
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
78.4745
65.1883
98.5629
35.0700
7794168231211
91.6667
ckim-gatkSNP*HG002compoundhethomalt
99.4644
99.0354
99.8971
35.0629
10678104106771110
90.9091
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
egarrison-hhgaINDEL*func_cdshomalt
100.0000
100.0000
100.0000
35.0575
226022600
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
jmaeng-gatkSNP*HG002compoundhethomalt
99.4551
99.0262
99.8877
35.0471
10677105106761211
91.6667
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
83.2773
71.8970
98.9378
35.0419
122848013041410
71.4286
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.2232
98.5968
99.8577
35.0385
210830210530
0.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.5952
84.4937
100.0000
35.0348
5349856000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
91.5952
84.4937
100.0000
35.0348
5349856000
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.1212
96.7368
99.5458
35.0221
2668902630129
75.0000
ckim-dragenSNP*HG002compoundhethomalt
99.8656
99.8980
99.8332
35.0217
1077111107711818
100.0000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
71.8529
57.2932
96.3338
35.0041
7625687622927
93.1034
astatham-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.2363
98.5269
99.9560
35.0014
454868454421
50.0000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
35.0000
1201300
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
35.0000
1201300
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
59.4595
45.8333
84.6154
35.0000
11131122
100.0000
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.4937
90.2365
99.1726
34.9981
148816116781414
100.0000
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1375
92.6622
99.8837
34.9962
1528121171822
100.0000
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
91.8719
84.9658
100.0000
34.9929
3736645700
ciseli-customINDELD16_PLUSHG002compoundhet*
6.2397
5.0406
8.1875
34.9864
118222311713121251
95.3506
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
77.9566
64.5649
98.3573
34.9800
51228147984
50.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
92.1775
85.6492
99.7831
34.9788
3766346011
100.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.4586
91.4533
99.8307
34.9752
2322217235943
75.0000
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
62.9012
59.7110
66.4516
34.9559
10336971030520432
83.0769
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
76.9320
62.9626
98.8676
34.9557
6992411364617465
87.8378
qzeng-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
88.1791
79.5031
98.9806
34.9542
140836320392115
71.4286
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
89.1201
81.4606
98.3693
34.9531
13608309714116234204
87.1795
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
89.1201
81.4606
98.3693
34.9531
13608309714116234204
87.1795
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7743
99.7743
99.7743
34.9486
442144211
100.0000
rpoplin-dv42INDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.3569
98.7220
100.0000
34.9474
309430900
astatham-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
93.3542
87.6993
99.7886
34.9381
3855447211
100.0000
hfeng-pmm1SNP*HG002compoundhethomalt
99.9026
99.9073
99.8980
34.9324
1077210107721111
100.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
50.1159
99.4924
33.4936
34.9322
1961209415385
92.7711
ckim-isaacINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
82.4180
70.7101
98.7723
34.9310
167369317702218
81.8182
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
85.9187
79.7297
93.1494
34.9226
118309797270
97.2222
ckim-dragenSNP*func_cdshet
99.2748
99.9642
98.5949
34.9057
111574111571591
0.6289
raldana-dualsentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7812
94.0000
99.7319
34.9040
3292137211
100.0000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
54.7235
48.0480
63.5530
34.9033
640692374221461725
80.3821
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
22.9356
12.9887
97.9381
34.8993
1036909522
100.0000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.2388
86.5886
98.6779
34.8864
7244112272409780
82.4742
bgallagher-sentieonSNP*HG002compoundhethomalt
99.8887
99.9165
99.8609
34.8774
107739107681514
93.3333
anovak-vgSNPtiHG002compoundhethomalt
82.5870
78.8207
86.7313
34.8753
582815665275807534
66.1710
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.1496
91.6793
98.8930
34.8700
242422029483331
93.9394
jlack-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200hetalt
87.2551
77.6765
99.5283
34.8694
3419842222
100.0000
astatham-gatkSNP*HG002compoundhethomalt
99.8748
99.8702
99.8794
34.8528
1076814107631312
92.3077