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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
63051-63100 / 86044 show all
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.1804
63.0915
99.3707
35.9250
8853517990005756
98.2456
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1036
93.1474
99.2537
35.9088
153611317291313
100.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.8997
99.9749
35.9073
39834398311
100.0000
jpowers-varprowlINDELD16_PLUSHG002compoundhethet
32.6811
83.4568
20.3190
35.8955
3386734413491346
99.7776
mlin-fermikitINDEL*func_cds*
98.6486
98.4270
98.8713
35.8900
438743853
60.0000
ckim-dragenSNPtiHG002compoundhet*
99.7941
99.8055
99.7828
35.8899
1744434174573818
47.3684
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
62.9939
46.2118
98.9156
35.8827
2513292520982320
86.9565
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1173
93.0761
99.3641
35.8818
750155875004848
100.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1173
93.0761
99.3641
35.8818
750155875004848
100.0000
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6037
99.7194
99.4884
35.8783
213262139112
18.1818
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
66.5254
97.5155
50.4823
35.8763
1574157154154
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1785
92.6743
99.9582
35.8734
2353186238911
100.0000
hfeng-pmm2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.5801
93.4226
99.9585
35.8626
2372167240811
100.0000
asubramanian-gatkSNPtiHG002compoundhet*
98.1691
96.6358
99.7519
35.8566
16890588168884217
40.4762
jli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.6216
99.8758
99.3687
35.8426
7238972414644
95.6522
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.1762
50.3884
58.5798
35.8416
10378102181115378866105
77.4157
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.1705
96.3571
95.9846
35.8391
69832646980292133
45.5479
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7686
99.6532
99.8842
35.8231
17246172522
100.0000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
35.8158
13101131000
ltrigg-rtg2INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
84.6847
74.0157
98.9474
35.8108
94339411
100.0000
ndellapenna-hhgaSNP*HG002compoundhethomalt
98.7381
99.4064
98.0787
35.7852
107186410720210197
93.8095
jpowers-varprowlINDELI1_5func_cds*
94.9438
93.8889
96.0227
35.7664
1691116977
100.0000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
83.8258
90.7659
77.8716
35.7639
20742112305655476
72.6718
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.3172
98.6436
100.0000
35.7535
210929210600
raldana-dualsentieonINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.7075
95.5178
100.0000
35.7483
123658134800
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
89.9913
81.8038
100.0000
35.7482
51711554100
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
87.5916
78.3357
99.3277
35.7451
54615159144
100.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.1282
98.9531
99.3039
35.7393
7278777276513
5.8824
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
95.0937
93.1429
97.1279
35.7383
326243721110
90.9091
ckim-dragenINDELD16_PLUSHG002compoundhet*
94.5882
94.4468
94.7301
35.7379
22111302211123120
97.5610
qzeng-customSNPtvfunc_cds*
99.6678
99.6797
99.6560
35.7311
4357144345150
0.0000
astatham-gatkSNPtiHG002compoundhet*
99.2746
98.6669
99.8899
35.7263
17245233172431918
94.7368
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.4759
99.0435
99.9122
35.7223
341733341430
0.0000
ckim-vqsrINDELI6_15*hetalt
95.9384
92.2582
99.9244
35.7201
7889662793065
83.3333
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5281
93.3899
99.8846
35.7196
1540109173122
100.0000
anovak-vgINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
70.5882
75.0000
66.6667
35.7143
62632
66.6667
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.2310
86.9440
98.2026
35.7143
606916011111
100.0000
rpoplin-dv42INDEL*func_cdshomalt
99.3348
99.1150
99.5556
35.7143
224222411
100.0000
rpoplin-dv42INDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
80.0000
66.6667
100.0000
35.7143
84900
ciseli-customSNPtvfunc_cdshetalt
94.7368
90.0000
100.0000
35.7143
91900
cchapple-customINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
35.7143
90900
ciseli-customSNP*func_cdshetalt
94.7368
90.0000
100.0000
35.7143
91900
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5204
99.2464
99.7960
35.7063
342426342574
57.1429
ckim-gatkINDELI6_15*hetalt
95.9700
92.3167
99.9244
35.7056
7894657793565
83.3333
qzeng-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
94.5805
96.4115
92.8177
35.7016
40315134410412
11.5385
dgrover-gatkSNPtiHG002compoundhet*
99.8369
99.8284
99.8455
35.6925
1744830174462721
77.7778
hfeng-pmm3INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.6295
93.7143
99.7319
35.6897
3282237211
100.0000
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
94.5664
97.8336
91.5103
35.6834
70901577071656646
98.4756
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.1401
94.4708
99.9645
35.6743
5570326563122
100.0000
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.1401
94.4708
99.9645
35.6743
5570326563122
100.0000