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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
63001-63050 / 86044 show all
jli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.5613
90.0889
99.5008
36.1205
344537935881817
94.4444
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.9633
96.4517
99.5230
36.1107
788329079293838
100.0000
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.5345
99.7661
99.3039
36.1103
213352140152
13.3333
rpoplin-dv42INDELI6_15HG002compoundhet*
93.3249
90.3259
96.5299
36.1005
79278497928285281
98.5965
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
90.5721
88.6430
92.5871
36.0947
2175327872172017391695
97.4698
anovak-vgSNP*lowcmp_SimpleRepeat_triTR_11to50*
97.2834
97.2128
97.3541
36.0909
71502057175195109
55.8974
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
75.6523
61.3266
98.7108
36.0827
84415323796310495
91.3462
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5185
99.0415
100.0000
36.0825
310331000
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_11to50het
96.9633
96.8927
97.0341
36.0748
24017724217441
55.4054
jmaeng-gatkINDELD6_15HG002compoundhet*
95.0402
94.1203
95.9783
36.0728
85005318496356353
99.1573
cchapple-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.6929
99.6061
99.7799
36.0694
22769272064
66.6667
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.2495
86.6245
98.6558
36.0651
205331720552821
75.0000
mlin-fermikitINDELD6_15HG002compoundhet*
69.7015
65.9174
73.9466
36.0645
59533078594920962075
98.9981
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
92.8925
86.9894
99.6550
36.0629
2300344231188
100.0000
jmaeng-gatkINDELI6_15*hetalt
95.7466
91.8723
99.9620
36.0612
7856695789632
66.6667
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.3685
95.4428
99.3735
36.0555
18438820621313
100.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3685
95.4428
99.3735
36.0555
18438820621313
100.0000
gduggal-bwavardINDELD16_PLUSHG002compoundhethet
32.7572
85.1852
20.2773
36.0547
3456035113801369
99.2029
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.1057
98.5033
99.7155
36.0522
210632210362
33.3333
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5605
93.4506
99.8846
36.0517
1541108173122
100.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
83.4646
98.7578
72.2727
36.0465
15921596161
100.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.0853
96.5607
99.6588
36.0406
23696844236628158
71.6049
jmaeng-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
95.9181
92.2078
99.9396
36.0371
1633138165511
100.0000
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
58.9695
42.1941
97.8873
36.0360
10013727866
100.0000
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6905
93.9802
99.5617
36.0300
768149277233434
100.0000
ltrigg-rtg2INDELD1_5func_cdshet
99.4220
100.0000
98.8506
36.0294
8508610
0.0000
gduggal-bwavardINDELI1_5func_cds*
94.9210
94.4444
95.4023
36.0294
1701016686
75.0000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7395
99.5954
99.8841
36.0267
17237172422
100.0000
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5247
93.9357
99.2605
36.0262
154910017451313
100.0000
raldana-dualsentieonINDELI6_15HG002compoundhet*
92.3351
89.3573
95.5182
36.0215
78429347843368366
99.4565
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
40.4915
37.7049
43.7229
36.0111
2338101130128
98.4615
jlack-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.0093
27562275622
100.0000
jmaeng-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
94.9153
90.3226
100.0000
36.0000
1962120800
rpoplin-dv42INDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
36.0000
1501511
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
75.0000
60.0000
100.0000
36.0000
15101600
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
80.6824
72.6236
90.7531
35.9976
9553609529793
95.8763
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
92.6354
91.1441
94.1762
35.9848
166421617173031070870
81.3084
jli-customINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
95.4217
91.2442
100.0000
35.9756
1981921000
astatham-gatkSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
astatham-gatkSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
bgallagher-sentieonSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
bgallagher-sentieonSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
35.9667
308230800
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
61.8938
45.0533
98.8388
35.9607
2450298821282522
88.0000
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7815
94.0000
99.7326
35.9589
3292137311
100.0000
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9819
99.9637
100.0000
35.9582
27571275700
asubramanian-gatkINDELC6_15HG002compoundhethet
0.0000
0.0000
35.9551
000570
0.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.1922
94.7487
99.7651
35.9534
167893169944
100.0000
dgrover-gatkSNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
35.9375
205220500
gduggal-bwafbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
82.2369
70.5069
98.6486
35.9307
1536414622
100.0000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.4850
99.2977
99.6730
35.9284
39592839621312
92.3077