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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
62901-62950 / 86044 show all
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8002
99.6012
100.0000
36.4268
274711274700
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0950
92.5870
99.8794
36.4264
2448196248433
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9637
99.9275
100.0000
36.4245
27562275600
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.3908
99.0173
99.7672
36.4175
171317171444
100.0000
anovak-vgSNPtvfunc_cds*
98.2741
97.7580
98.7957
36.4158
42739842665232
61.5385
jli-customINDEL*func_cdshomalt
99.7792
100.0000
99.5595
36.4146
226022611
100.0000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
87.9829
82.3708
94.4157
36.4127
5691121812224723701
96.9571
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
76.0027
83.0403
70.0649
36.4124
864217651112747543440
72.3601
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9259
99.9555
36.4048
67405674033
100.0000
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
57.5970
40.5152
99.5822
36.4039
692101671533
100.0000
gduggal-snapfbINDELD6_15*het
85.3034
77.5966
94.7099
36.4009
8995259714269797773
96.9887
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
35.1538
58.3333
25.1572
36.4000
141040119113
94.9580
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_11to50het
75.1577
77.7747
72.7110
36.3946
2845813407415291142
74.6893
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.9473
92.9048
99.1959
36.3902
153211717271414
100.0000
hfeng-pmm3INDELI6_15HG002compoundhet*
95.0754
92.8327
97.4292
36.3885
81476298148215212
98.6047
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.3981
98.8035
100.0000
36.3869
272533272900
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.5928
93.5112
99.8845
36.3837
1542107172922
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.3783
27562275622
100.0000
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
83.1268
71.4871
99.2941
36.3772
122148742233
100.0000
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.7235
99.7792
97.6898
36.3761
7231167231171170
99.4152
dgrover-gatkSNP*HG002complexvarhetalt
99.6764
99.3548
100.0000
36.3636
308230800
dgrover-gatkSNPtvHG002complexvarhetalt
99.6764
99.3548
100.0000
36.3636
308230800
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
36.3636
2102100
egarrison-hhgaINDELI6_15func_cds*
98.8235
97.6744
100.0000
36.3636
4214200
cchapple-customINDELI6_15func_cdshet
100.0000
100.0000
100.0000
36.3636
2402800
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
36.3636
2102100
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
36.3636
2102100
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
36.3636
2102100
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
36.3636
2102100
asubramanian-gatkINDELC1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
36.3636
00070
0.0000
gduggal-bwafbINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
96.2963
100.0000
92.8571
36.3636
1301311
100.0000
mlin-fermikitINDELD6_15func_cdshet
98.2456
96.5517
100.0000
36.3636
2812800
ltrigg-rtg1SNPtiHG002complexvarhetalt
99.0419
99.5169
98.5714
36.3636
206120733
100.0000
jmaeng-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2580
95.1314
99.4819
36.3636
123163134477
100.0000
gduggal-snapplatSNPtv*het
98.3145
98.0664
98.5638
36.3598
580263114415806588461866
10.2352
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6831
93.6838
99.8808
36.3590
2477167251433
100.0000
mlin-fermikitINDELI6_15HG002compoundhet*
62.8773
55.7315
72.1249
36.3543
48913885489818931888
99.7359
qzeng-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
96.4295
98.6456
94.3107
36.3510
43764312611
42.3077
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.7862
99.5733
100.0000
36.3469
700369000
ckim-dragenINDELD6_15HG002compoundhet*
94.6830
94.0760
95.2979
36.3455
84965358492419416
99.2840
jmaeng-gatkSNPtiHG002compoundhet*
99.3792
98.9129
99.8498
36.3432
17288190172882622
84.6154
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
93.3120
87.8747
99.4664
36.3431
718299122371212
100.0000
ckim-vqsrSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.4715
98.9485
100.0000
36.3424
272929272900
raldana-dualsentieonINDEL*func_cdshomalt
100.0000
100.0000
100.0000
36.3380
226022600
jli-customSNPtiHG002complexvarhetalt
99.5146
99.0338
100.0000
36.3354
205220500
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
67.4226
63.3961
71.9952
36.3292
59963462604423512331
99.1493
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.7607
94.8001
96.7410
36.3288
38652123859130125
96.1538
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
63.9253
47.2441
98.8157
36.3273
3360375228373429
85.2941
gduggal-bwaplatSNPtifunc_cdshet
99.4112
99.2709
99.5519
36.3268
8442628442384
10.5263
dgrover-gatkINDELD6_15HG002compoundhet*
95.8086
95.3161
96.3062
36.3267
86084238604330327
99.0909