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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NA Truth TPTruth FNQuery TPQuery FPFP gt% FP ma
62851-62900 / 86044 show all
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8184
99.8386
99.7982
36.6402
24744247351
20.0000
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
76.0030
61.7352
98.8481
36.6332
135283813731616
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.8097
92.2658
99.6368
36.6287
154131292156355757
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.8097
92.2658
99.6368
36.6287
154131292156355757
100.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
97.9977
96.8112
99.2136
36.6279
7592575766
100.0000
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
63.4096
46.8051
98.2726
36.6180
58666651296
66.6667
egarrison-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6287
99.4366
99.8215
36.6123
67073867091210
83.3333
jmaeng-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.7576
99.6772
99.8383
36.6060
24708246940
0.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.5978
99.3202
99.8769
36.6057
730550730194
44.4444
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
60.1585
64.6439
56.2551
36.6040
94495168186931453611429
78.6255
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
93.1339
90.7869
95.6056
36.5855
1006110219986459410
89.3246
hfeng-pmm1SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
100.0000
100.0000
100.0000
36.5834
39870398700
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1302
92.8764
99.6203
36.5800
155151190157436060
100.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1302
92.8764
99.6203
36.5800
155151190157436060
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1399
92.8943
99.6204
36.5756
155181187157466060
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1399
92.8943
99.6204
36.5756
155181187157466060
100.0000
ltrigg-rtg1INDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
95.4970
92.3077
98.9145
36.5749
7326172988
100.0000
ltrigg-rtg2INDEL*func_cds*
99.3248
99.1011
99.5495
36.5714
441444220
0.0000
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
93.8528
89.4478
98.7142
36.5693
236527923803129
93.5484
ltrigg-rtg2INDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
98.5119
97.7585
99.2769
36.5690
924621291996751
76.1194
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
53.2015
46.3732
62.3880
36.5667
748865403924351935
79.4661
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
49.3741
54.9918
44.7978
36.5595
3362758311024846
82.6172
eyeh-varpipeINDEL*func_cdshet
93.8679
92.9907
94.7619
36.5559
19915199119
81.8182
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.8382
95.5706
94.1169
36.5552
1273597679480470
97.9167
ckim-gatkSNP*func_cdshet
99.5225
99.9283
99.1199
36.5539
11153811150991
1.0101
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_11to50het
98.0340
96.7727
99.3285
36.5490
2069692071140
0.0000
jmaeng-gatkINDELI6_15HG002compoundhet*
93.8901
92.0123
95.8462
36.5464
80757018076350348
99.4286
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
63.1996
46.4567
98.8107
36.5459
3304380829083531
88.5714
jpowers-varprowlINDELD16_PLUSHG002compoundhet*
17.0370
14.9082
19.8751
36.5405
349199235014111404
99.5039
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
50.4505
33.7349
100.0000
36.5385
28553300
anovak-vgSNPtvtech_badpromotershomalt
93.1507
87.1795
100.0000
36.5385
3453300
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
92.9480
87.0130
99.7519
36.5354
4026040211
100.0000
jli-customINDELI6_15*hetalt
97.1523
94.5503
99.9016
36.5262
8085466812388
100.0000
mlin-fermikitSNPtiHG002compoundhet*
93.7043
92.8195
94.6061
36.5228
16223125516224925739
79.8919
hfeng-pmm3INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
98.1102
96.2906
100.0000
36.5079
124648136000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.4167
92.9048
98.0682
36.5079
153211717263429
85.2941
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
65.0593
53.4989
82.9932
36.5011
2372062445034
68.0000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
61.6432
97.7532
45.0148
36.4990
274163274533533280
97.8228
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.5727
82.8140
84.3455
36.4989
1512131381519428202630
93.2624
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
82.0755
69.6000
100.0000
36.4964
87388700
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7892
99.7825
99.7959
36.4791
7339167335155
33.3333
hfeng-pmm1INDELI6_15HG002compoundhet*
94.9235
92.7871
97.1606
36.4711
81436338144238235
98.7395
asubramanian-gatkINDELD6_15HG002compoundhet*
94.5808
93.8213
95.3528
36.4670
84735588474413394
95.3995
ckim-vqsrSNPtiHG002compoundhet*
98.9109
97.9517
99.8891
36.4634
17120358171201917
89.4737
egarrison-hhgaINDELI1_5func_cdshet
98.3333
100.0000
96.7213
36.4583
5905920
0.0000
jli-customSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8912
99.8550
99.9274
36.4538
27544275422
100.0000
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.9266
94.4029
99.5890
36.4317
15770935159926664
96.9697
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.9266
94.4029
99.5890
36.4317
15770935159926664
96.9697
ckim-vqsrINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8234
96.2133
99.4883
36.4312
124549136177
100.0000
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8234
96.2133
99.4883
36.4312
124549136177
100.0000